Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3345 |
Symbol | |
ID | 4255758 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 3960649 |
End bp | 3961200 |
Gene Length | 552 bp |
Protein Length | 183 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638124027 |
Product | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase |
Protein accession | YP_739384 |
Protein GI | 114048834 |
COG category | [R] General function prediction only |
COG ID | [COG1778] Low specificity phosphatase (HAD superfamily) |
TIGRFAM ID | [TIGR01662] HAD-superfamily hydrolase, subfamily IIIA [TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.370774 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.25359 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCACAGC AAGGATTTTA CGGCCCCATC AGCGACGATG TTTGGCAAAG GGCACAAAAA ATTAAACTGC TGATCTGCGA TGTGGACGGA GTGTTTTCCG ACGGCCGCAT TTATTTGAGC AACTCGGGGG AAGAACTCAA AGCCTTCCAC ACCCGTGATG GTTATGGCGT GCGTTCATTA TTGACCAGTG GTTTTAATCT GGCGGTTATC ACTGGCCGTC AGTCTAAAAT CGTTGAAAAC CGCATGACGG CACTGGGTGT AACCCATATT TATCAGGGCG TAGATAATAA ATTCGCCCCC TATGAAGAAC TGCTATCGCT CTACAATGTC ACCCCAGAAG AAGTCGCCTA TATCGGTGAT GATATTGTCG ACTTGCCGGT GATGAATGTG GTCGGCCTTG CCGCCTGTGT TGCCGATGGT CATCCCTATG TCCGCCAACA TGCCCATTTT GTGACTCACT TAAATGGTGG CCACGGTGCA CTCAGGGAAC TCACGGATCT GCTCTTGCTG AGCCAAAATA AGTTCACTTC CGCCCATGGG ATGAGCATAT GA
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Protein sequence | MPQQGFYGPI SDDVWQRAQK IKLLICDVDG VFSDGRIYLS NSGEELKAFH TRDGYGVRSL LTSGFNLAVI TGRQSKIVEN RMTALGVTHI YQGVDNKFAP YEELLSLYNV TPEEVAYIGD DIVDLPVMNV VGLAACVADG HPYVRQHAHF VTHLNGGHGA LRELTDLLLL SQNKFTSAHG MSI
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