Gene Shewmr7_3318 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3318 
Symbol 
ID4255187 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp3927410 
End bp3929890 
Gene Length2481 bp 
Protein Length826 aa 
Translation table11 
GC content51% 
IMG OID638124000 
Productnitrate reductase catalytic subunit 
Protein accessionYP_739357 
Protein GI114048807 
COG category[C] Energy production and conversion 
COG ID[COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01706] periplasmic nitrate reductase, large subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATTA GCCGCCGCGA GTTTCTCAAG GCTAACGCAG CGGTTGCCGC TGCCACAGCC 
GTTGGCGTCA CGCTTCCCGT GAAGATGGTC GAAGCTGCCG AGTCAGATAA TATTAAGTGG
GATAAAGCGC CCTGCCGTTT TTGCGGTGTG GGTTGTAGCG TATTAGTTGG TACCAAAGCG
GGTAAAGTGG TCGCCACTAA GGGCGATCCT GAAAGCCCTG TTAACCGTGG TTTGAACTGT
ATTAAGGGTT ACTTCCTGTC GAAAATCATG TACGGCAAGG ACAGATTAAC CACGCCGCTG
CTGCGGATGA AAGATGGCAA ATACCACAAA GAAGGCGAAT TTACCCCAGT TAGCTGGGAT
GTCGCCTTAG ATACTATGGC CGCTAAGTGG AAACACAGCA TCGCCACTAA GGGACCAACC
TCGGTCGGTA TGTTTGGCTC TGGCCAGTGG ACCATTTGGG AAGGTTATGC CGCCTCTAAA
TTACATAAGG CCGGTTTCCT CACTAACAAT ATCGACCCTA ACGCCCGCCA CTGTATGGCA
TCGGCCGTAG GTGGCTTTAT GCGTACCTTC GGTATCGACG AGCCTATGGG TTGTTACGAT
GACTTAGAAG CCGCCGATCA CTTTGTGCTC TGGGGCGCCA ACATGGCCGA GATGCACCCG
ATCCTGTGGG CGCGTTTATC CGACCGCCGC TTAAGCCACA AAGACAGTCG CGTACACGTA
CTCTCCACCT TCGAGAACCG CAGCTTCGAC TTAGCGGACA ACCCTATGGT GTTCCGCCCA
CAGTCAGACT TAGTGATCCT CAACTTTATT GCTAACTACA TCATTCAAAA CAAAGCCGTG
AATACCGACT TTGTGACTAA GCATACTAAG TTTGCCCTCG GTGTGGATGA TATAGGTTAT
GGTCTGCGTC CAGATCATCC GTTAGAGAAG AAAGCTAAAA ACCCAGGCAA TGGTAAATCC
AGCCCTATCA GCTTCGAAGA ATACGCTAAG TTCGTCAGCA CTTATACGCT GGAATATGCG
GCGAAGATGA GTGGTGTAGA ACCTGAAAAA TTAGAAACCT TAGCTAAGGC CTATGCCGAT
CCTAAGGTCA AAGTCATGAG TCTGTGGACC ATGGGCATCA ACCAACACGT ACGTGGCGTG
TGGGCAAACA ACATGCTCTA CAACATCCAC TTACTCACAG GTAAAATCGC CACTCCAGGT
AACAGCCCAT TCTCATTAAC GGGTCAACCT TCGGCCTGTG GTACTGCCCG TGAAGTCGGC
ACCTTCGCCC ACCGCTTACC TGCAGATATG GTAGTGGCTA ACGATGCACA CCGCGCCATC
ACCGAAAAAG TGTGGCAGGT ACCAGAAGGC ACCATTCCGC CAAAACCAGG CTTCCATGCC
GTGCTGCAAA GCCGCATGCT CAAGGACGGT AAACTCAACT GCTATTGGAC CATGTGTACC
AACAATATGC AGGCGGGTCC GAATATCAAC GATGAAATCT ACCCCGGTTT CCGTAACCCA
GAAAACTTTA TCGTGGTATC CGATCCATAC CCAACCGTTA CCGCCATGGC CGCCGACTTA
ATCCTGCCTA CCGCCATGTG GGTAGAAAAA GAAGGAGCCT ATGGTAACGC CGAGCGCCGC
ACCCATATGT GGCATCAACA GGTCAAAGCG CCAGAAGGGG CTAAATCGGA TCTGTGGCAA
TTAGTCGAGT TTTCAAAACG CTTTAAAGTG TCTGAAGTGT GGCCTGCTGA GCTTATCGCC
AAGCAACCTG AATACGCTGA CAAAACGCTT TATGAAGTGC TGTTTGCCAA CGGCGTTATC
AACAAGTTCC CAACCACAGA TTGTAAGGGC GACTTAAACG ATGAAAGCGC GCACTTTGGC
TTCTATCTAC AAAAAGGCAT TTTCGAAGAA TACGCCGCCT TCGGTCGCGG CCATGGTCAT
GACTTAGCCG ACTTCGACCG TTACCACGAA ACCCGCGGTC TACGCTGGCC TGTGGTTGAA
GGCAAAGAAA CCCTGCGCCG CTTCGTTGAA GGTAGCGATC CTTATGTGAA GGCAGGTGAA
GGCTACAAGT TCTACGGCAA ACCCGATGGC AAAGCGGTGA TTTTCGCCCT GCCCTACGAG
CCTGCGGCAG AAGAGCCAAA TGAAGAATAC GATCTGTGGA TGTCTACCGG CCGTGTACTC
GAACACTGGC ATACAGGTTC GATGACAGCC CGTGTACCTG AGCTGTACCG CGCTTACCCC
GATGCACAAA TCTTTATGCA TCCTGAAGAC GCTAAGGCCC GAGGTCTGCA ACGTGGTGAT
GAAGTGCTAG TCGCATCCCC CCGTGGTGAG GTCAAAACCC GTGTCGAAAC CAAAGGCCGT
AACAAACCGC CACGCGGTGT GGTGTTTATG CCCTTCTTCG ATGCGCGTCA GTTAGTTAAT
AAGTTGATTC TGGATGCGAC CGATCCACTG TCAAAAGAAA CTGACTTTAA GAAGTGTCCC
GTAAAAGTGA TGAAGGCCTA A
 
Protein sequence
MSISRREFLK ANAAVAAATA VGVTLPVKMV EAAESDNIKW DKAPCRFCGV GCSVLVGTKA 
GKVVATKGDP ESPVNRGLNC IKGYFLSKIM YGKDRLTTPL LRMKDGKYHK EGEFTPVSWD
VALDTMAAKW KHSIATKGPT SVGMFGSGQW TIWEGYAASK LHKAGFLTNN IDPNARHCMA
SAVGGFMRTF GIDEPMGCYD DLEAADHFVL WGANMAEMHP ILWARLSDRR LSHKDSRVHV
LSTFENRSFD LADNPMVFRP QSDLVILNFI ANYIIQNKAV NTDFVTKHTK FALGVDDIGY
GLRPDHPLEK KAKNPGNGKS SPISFEEYAK FVSTYTLEYA AKMSGVEPEK LETLAKAYAD
PKVKVMSLWT MGINQHVRGV WANNMLYNIH LLTGKIATPG NSPFSLTGQP SACGTAREVG
TFAHRLPADM VVANDAHRAI TEKVWQVPEG TIPPKPGFHA VLQSRMLKDG KLNCYWTMCT
NNMQAGPNIN DEIYPGFRNP ENFIVVSDPY PTVTAMAADL ILPTAMWVEK EGAYGNAERR
THMWHQQVKA PEGAKSDLWQ LVEFSKRFKV SEVWPAELIA KQPEYADKTL YEVLFANGVI
NKFPTTDCKG DLNDESAHFG FYLQKGIFEE YAAFGRGHGH DLADFDRYHE TRGLRWPVVE
GKETLRRFVE GSDPYVKAGE GYKFYGKPDG KAVIFALPYE PAAEEPNEEY DLWMSTGRVL
EHWHTGSMTA RVPELYRAYP DAQIFMHPED AKARGLQRGD EVLVASPRGE VKTRVETKGR
NKPPRGVVFM PFFDARQLVN KLILDATDPL SKETDFKKCP VKVMKA