| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3262 |
|---|
| Symbol | |
|---|
| ID | 4255132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 3863413 |
|---|
| End bp | 3864705 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638123945 |
|---|
| Product | amino acid transporter, transmembrane |
|---|
| Protein accession | YP_739302 |
|---|
| Protein GI | 114048752 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0814] Amino acid permeases |
|---|
| TIGRFAM ID | [TIGR00814] serine transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAG ATGCGATCAG TGTTCTCGAA ACACCTCAAA GCACGCAAGA AAACACAACA
AGACACTTAC CATGGACGCG CCAAGACACG ACTTGGATGC TGAGTTTATT TGGCACCGCT
GTGGGGGCGG GCATTCTATT TCTGCCTATC AATGCGGGCA TGGGCGGTTT TTGGCCCTTA
GTCTTGATGG CCATTATCAT CGGGCCTATG ACCTATCTCG CGCACCGTGG CCTATCGCGC
TTCGTATGTT CATCGAGCAT TCCCGGCAGT GACATTACCC AAGTGGTCGA AGAACACTTT
GGGATTGGCG CGGGCAAGGC GATTACGCTG CTGTATTTCT TAGCGATTTA TCCCATCGTA
TTGATCTACG GCGTGGGGAT CACTAATACC GTCGACAGCT TTATCGTCAA CCAATTGGGC
ATGGATTCAC CGCCACGTTT TTTGCTGTCT GGCATTTTGA TTTTCGGCAT GATGGCTGTG
ATGGTCTCTG GTGAGCAATT TATGCTGAAG GTGACTCAGT TGCTGGTGTA TCCGCTGGTG
GGCATTTTAG CCTTTATGTC CATCTATCTG GTCCCAGAGT GGAAAATGGA TGCGCTGCAA
GTCGTGCCAG AAACTGGCGC CTTTTTAGGC ACAGTATGGT TAACCATTCC TGTACTGGTG
TTTGCCTTTA ATCATTCTCC GGCGATTTCG CAATTTTCGG TTTCCCTTAA GCGTGACCAT
GGGGCCAACG CGGCCCGTAA GGCCGATGTG ATCCTGCGTA ATACCTCGAT GATGTTAGTC
GGCTTTGTGA TGTTATTCGT GTTCTCCTGC GTCTTGTCAC TGTCGCCAGA ACAGTTGGCT
GAAGCTAAGG CGAAGAACCT GCCGATTTTA TCTTACTTGG CGAACGTGCA TGACAGTGGT
TTTGTCAGCT ACTTCGGGCC TTTCATCGCG TTTGTGGCGA TTGTGTCTTC TTTCTTTGGC
CACTACATGG GTGCGACTGA GGGCATGAAG GGCATTATCG TTAAGCAGCT GCGTTCAAGT
AACAAGCAAA TCAGCGAGAA CAAGCTGAAC AAGTTTATCT TAGTGTTTAT GTTTGCCACG
ATTTGGGCCG TTGCAATTAT AAACCCAAGT ATTTTGGGAA TGATCGAGGC GCTGGGCGGC
CCGATTATTG CGGCGATTTT GTACTTAATG CCAATGTACG CCGTGTACAA AGTGCCTGCG
TTGAAGGCTT ATCGAAACCG CATCAGCAAC GTATTTGTGA TTATTGCGGG CTTACTGGCG
ATGACCGCCA TTCTGTTTGG TCTGCTGAGA TAA
|
|---|
| Protein sequence | MQKDAISVLE TPQSTQENTT RHLPWTRQDT TWMLSLFGTA VGAGILFLPI NAGMGGFWPL
VLMAIIIGPM TYLAHRGLSR FVCSSSIPGS DITQVVEEHF GIGAGKAITL LYFLAIYPIV
LIYGVGITNT VDSFIVNQLG MDSPPRFLLS GILIFGMMAV MVSGEQFMLK VTQLLVYPLV
GILAFMSIYL VPEWKMDALQ VVPETGAFLG TVWLTIPVLV FAFNHSPAIS QFSVSLKRDH
GANAARKADV ILRNTSMMLV GFVMLFVFSC VLSLSPEQLA EAKAKNLPIL SYLANVHDSG
FVSYFGPFIA FVAIVSSFFG HYMGATEGMK GIIVKQLRSS NKQISENKLN KFILVFMFAT
IWAVAIINPS ILGMIEALGG PIIAAILYLM PMYAVYKVPA LKAYRNRISN VFVIIAGLLA
MTAILFGLLR
|
|---|
| |