Gene Shewmr7_3249 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3249 
Symbol 
ID4256941 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand- 
Start bp3850567 
End bp3851583 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content50% 
IMG OID638123932 
Producterythrose 4-phosphate dehydrogenase 
Protein accessionYP_739289 
Protein GI114048739 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01532] D-erythrose-4-phosphate dehydrogenase
[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.236434 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCGAG TCGCAATCAA TGGTTATGGT CGTATTGGCC GCTCAATTCT TCGCGCTTTA 
TATGAGTCCG GAAAACGTCA GCAAATACAA ATTGTCGCAA TCAACGAGTT GGCTAAGCCC 
GAAGCCATTG TTCACCTGAC CCAGTACGAC ACTACCCACG GTCGGTTTCA GCCCAGAGTC 
AAATTAGTCG ATGATCAGAT GCTGATCGGC GATGACGTCA TCAAAATTCT CCATGAACCG 
GATCCAGCTA AGTTGCCTTG GCGCGAGATG GACATCGATA TCGTCTATGA AGCGACTGGT 
GCCATCTTAG ATCGCAACAG CTGCGAGGCC CATATCCACG CAGGCGCCAA ACAGGTCTTA 
ATCAGTCACC CTTCTTCTGC CGATGTTGAC GGCACTATCG TTTACGGTGT GAACCAAGAC 
TTACTGCGCG CCGAGCATAC CGTGGTTTCC AACGCTTCTT GTACGACCAA CTGTATCGTG 
CCCGTTATCG ATGTACTGGA TAAACACTTT GGCGTGAAAA GTGGCGCCAT TACGACGATC 
CATTCGGCGA TGAACGATCA GCAAGTCATT GATGCCTATC ATGATGACTT ACGCCGCACC 
CGAGCTGCGG GCCAGTCAAT CATCCCCGTC GACACTAAAC TTGCCCGCGG TATCGAGCGG 
ATTTTGCCGC ACATGAAAGA CAAGTTTGAG GCGATTTCGG TGCGCGTGCC CACGATCAAC 
GTTACCGCTA TCGATCTTTC GGTAACATTA GATAAAACAG TGGATATTGC GACCGTCAAT 
CAAGTGTTAG AATTGGCCGC CAATGGACGA TTTAACGGTA TCTTAGGCTA TACTGATGAG 
CCGCTCGTAT CCTGTGATTT TAACCATGAT CCGCGCTCAA GTATTGTCGA TGGCACCCAG 
ACTCGGGTGA GCGCAGGGCA GTTGGTTAAA CTGTTGCTGT GGTGCGATAA CGAGTGGGGC 
TTTGCAAATC GTATGCTAGA TACCAGTTTG GCGATGATTG CAGCTAAACA AAGCTGA
 
Protein sequence
MIRVAINGYG RIGRSILRAL YESGKRQQIQ IVAINELAKP EAIVHLTQYD TTHGRFQPRV 
KLVDDQMLIG DDVIKILHEP DPAKLPWREM DIDIVYEATG AILDRNSCEA HIHAGAKQVL 
ISHPSSADVD GTIVYGVNQD LLRAEHTVVS NASCTTNCIV PVIDVLDKHF GVKSGAITTI 
HSAMNDQQVI DAYHDDLRRT RAAGQSIIPV DTKLARGIER ILPHMKDKFE AISVRVPTIN 
VTAIDLSVTL DKTVDIATVN QVLELAANGR FNGILGYTDE PLVSCDFNHD PRSSIVDGTQ 
TRVSAGQLVK LLLWCDNEWG FANRMLDTSL AMIAAKQS