Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3232 |
Symbol | |
ID | 4255733 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 3826415 |
End bp | 3829771 |
Gene Length | 3357 bp |
Protein Length | 1118 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638123915 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_739272 |
Protein GI | 114048722 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [COG3300] MHYT domain (predicted integral membrane sensor domain) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGCTTAA AATATATGGC TTTTGATTGG TTTTCGCAGT TTTTTATTTC TTCCCAAGAC AGCCTCTTGC TGAATGTCTA TTACAATCCT CTGTTAGTGA CAATCTCTAT TCTGATTGCG ATTTTTTCGG CCTTTATGGC CTTTCAGGTC ACAACCCAAG CGGTGCTCAG CCAATCGAAA TCACGCCAGC AGATCATGTT GCTGACGGGA AGCGTCGTCC TTGGCGGTGG TGTCTGGTCG ATGCATTTTA TTGGCATGTT GGCCTTCGAT TTGTGTTCGC CCGTGACCTA TGATTTCGGG CTTACTGCCC TATCCTTGTT ACCCAGCATA GGTGCTTCAT GGGTGGCGTT GAACTTGCTA TCTAAGCCGA GTTTTAAGTT TTCCCAAGTG CTGATTAGCG GCATCTTAGT GGGGGCGGGG ATAGGGACTA TGCATTATGT GGGCATGGCA GCCATGGATA TGGCGCCATT ACTGCGATAC GACCCGTGGA TTTTTGCGCT GTCGATTGTG GTTGCCGTGC TACTGGCCAT TATTGCGCTG TGGGTTCGCA CCGGACTGAA TCAGCTTATC GCATCCAATA TGAGTGCCAT TACGAGCAAT TTTATTGCCA GTATCGTCAT GGGGCTGGCG ATATCGGGCA TGCATTACAC TGGCATGGCG GCGGCACGTT TTGTTAAACC TGAAGGACTT GAGCTTAGCG AGCAAAGCTC GGAAATTTCA TTCTATCTGG CGCTCGGCGT ATCGGTTACT ACTGTTATCA TCATCTGCTT AGTGCTGATA GTGAATGTGA TTTTTAAATA TAAAGACTTG TCTTTGCTCG CAAAATCCAA TGAAGACCGC ATGCGCGCCA TGATGAACAC TGCCGTTGAT GGCATTATTA CCATCGATGG ACAAGGCATC ATAGTCAATG TTAACAAAGC GGTGACTACC ATCTTAGGTT GGTCACCCGC CGAGTTACTG GGCGAGAATG TGAAAAAAAT CGTGCCTGAG TCGATTCGCC CACATCACGA TGGCTATTTA GCTCGGTATA TTAACACCCG TGAAGCACAG ATTATTGGCA CAGGCCGTGA GGTTGAGGCG CAGCATAAAG CGGGTCATTC GGTGCCGGTG CGCCTCAGCA TAGGTCATGT GATGCAGGGC AAAGCCCATT ACTTTGTTGG GTTTCTTTCC GATCTCAGCC TGCGTAATGA GATGGAACAA GAGCTTAAAA ACAATGAGGC AAAGTTTCGT TCGCTGATCA CCAATATTCC AGGCATTGCC TACCGCTGTA AAAGCACTGA GGGCTGGCCC ATGGTGTTTA TTAGTGAAGC CGTGCTGAAT ATCACCGGCT ATCCCGCCGA AGATTTTGAG CTTCCTCATC CTAAACGTTT CTTCTCGGAT CTCTATTATC CCGATGATAT AGAATCCATT TATGCACAGG CTCAGCCGCC GACCTTTTCG ATGGAATATC GCATCATACG CGCAGACGGC GAAGTGCGTT GGCTGTTCGA GCATGGTAAT TACATCCTAG ATGAAACCAG CAATGAGGTA TGGATTGACG GTTTCTTAAT GGATATCACC GAGCGTAAGG TGATGGAGCA GGACCTAGTA ACAGCCAAGA ACAATGCCGA GCAGGCGGCT GCGGCGCGTG CGGCCTTCTT GGCCAATATG AGCCATGAGA TCCGCACGCC TATGAATGCC ATCATAGGCT TTAGCGATAT TCTGTTGGAG TCGGTGTTAG ATAATGAGCA GCACAAACAG CTCTCCACCA TCAATCGCTC CGCCAAATCC TTAATGCATT TACTCAACGA TGTGCTCGAC AGCGCTAAGC TCGACAAGGG TAAATTAGAA TTAGAAAACC GAGTATTTTG CTTAACCGAT GAAATCGATA CTGTGATTTC AACCCTGTGG TTGCAGGCGA AAAAACAGCG CTTATCCCTC GAGGTCGATA TTGCTCCCTC TATGGCGGCG AACTTTATCG GCTCACCCGA GCGTATTCGC CAAGTGTTGA TTAATCTGAT AGGTAATGCC GTTAAATTTA CCTGTGAAGG CAAGGTTACG GTCAGTGTCT TCCCGCAAAA CGACAATCTG GTTACCTTCG AGATTATCGA TACCGGTATC GGGATGACAC CCGAGCAGCT TAATCGGGTA TTTGAGGCAT TTGCTCAGGC GGATGCTTCG ATGAGCCGAA AATACGGTGG TACAGGCTTA GGAACCACAA TTAGCAAACA GTTAGTTGAG CTGATGGGCG GTCAGCTTGA GGCTGAGAGT ACCTTAGGGC AAGGCAGTAC CTTCCGTTTT ACCATTCCCT TGCAACCCAG CTCTGAACCG CTCGAGACCG AGCGCGCAGA CCATGGCTCA TTACCGCCGC TGACCCTGTT AGTGGTCGAT GATATTCAGC AGAATATCGA TCTCCTCTCC GTATGGTTGA CCCGTCAAGG GCATAAAGTG ATCACCGCCC GCGATGGTGA GCAGGCGCTG CTGCGGATGC AAAAAGCCGA CATCGATATC ACGCTGATGG ACTTGCAAAT GCCTGTTATG GATGGACTGA CGGCGGCTAA AATGCGCCGT GAGCAAGAGG CTGAGTCCCA GTTGCCCCAT ATGCCAATCA TTGCGTTAAC CGCGAGCGTG CTTGAACAAG ATAAGAGCGC CGCAGAGCAA GCTGGTATGG ATGGTTTTGC CAATAAACCT ATAGATTTTG CGCTGTTGAC GCGGGAAATT GCCCGAGTCC TACAACTGAA TCCGCCGCAA GCCGAGTTTG AGTCTTTGCA GCCTTTAGGT AATCAGTTAG TCGATGAGGC CAAAGGCGTG AAGTTATGGG GCTCTAAACC ACAATTTATC AAAGAGTTGA TGAAGTTTAT TGCCCAATGG CCAGAAAAAA GCCAAGCACT ACAGCAGGCC ATTAGTGAGC AAGATACCGC AACGATTAAA CTCTTAAGCC ATAGTTTGAA AGGTGTCAGC GGTAATTTGG GTCTATTGCA ATGGATGAGC TACTTTGCGC AGTTAGAAAA GTTAACCCAA GCTGAGTCTC TCTCGTTTGA GGCCATGGAG GCTATCATTG CGAAAATCAG CGACTCCCTC GTGGAGATTG GAGATTATAT CGAGAGCACC ACAGTATCAT CTGCTAGTGG ATCCGAGCTC GCCCAATCGG GGACAGACGA TCCCGCACAA TTGTTAGCGC ATATCGATGC TTTGCTCGCG TCAGTTGTTC ATCATAGTTT TGATGAGTCT GATCTTGAGG CGCTTACCGC GCGTATTGAT GAGCATTTGC GCCTTAGCGT GACGATAATT ACCGAGGCCT TAGATAACTT TGATTTTGAT ATTGCCCATA ACGAATTGCT CGAGTTACGG CGTATTATCA CCGCGAATCA GGAGTAG
|
Protein sequence | MGLKYMAFDW FSQFFISSQD SLLLNVYYNP LLVTISILIA IFSAFMAFQV TTQAVLSQSK SRQQIMLLTG SVVLGGGVWS MHFIGMLAFD LCSPVTYDFG LTALSLLPSI GASWVALNLL SKPSFKFSQV LISGILVGAG IGTMHYVGMA AMDMAPLLRY DPWIFALSIV VAVLLAIIAL WVRTGLNQLI ASNMSAITSN FIASIVMGLA ISGMHYTGMA AARFVKPEGL ELSEQSSEIS FYLALGVSVT TVIIICLVLI VNVIFKYKDL SLLAKSNEDR MRAMMNTAVD GIITIDGQGI IVNVNKAVTT ILGWSPAELL GENVKKIVPE SIRPHHDGYL ARYINTREAQ IIGTGREVEA QHKAGHSVPV RLSIGHVMQG KAHYFVGFLS DLSLRNEMEQ ELKNNEAKFR SLITNIPGIA YRCKSTEGWP MVFISEAVLN ITGYPAEDFE LPHPKRFFSD LYYPDDIESI YAQAQPPTFS MEYRIIRADG EVRWLFEHGN YILDETSNEV WIDGFLMDIT ERKVMEQDLV TAKNNAEQAA AARAAFLANM SHEIRTPMNA IIGFSDILLE SVLDNEQHKQ LSTINRSAKS LMHLLNDVLD SAKLDKGKLE LENRVFCLTD EIDTVISTLW LQAKKQRLSL EVDIAPSMAA NFIGSPERIR QVLINLIGNA VKFTCEGKVT VSVFPQNDNL VTFEIIDTGI GMTPEQLNRV FEAFAQADAS MSRKYGGTGL GTTISKQLVE LMGGQLEAES TLGQGSTFRF TIPLQPSSEP LETERADHGS LPPLTLLVVD DIQQNIDLLS VWLTRQGHKV ITARDGEQAL LRMQKADIDI TLMDLQMPVM DGLTAAKMRR EQEAESQLPH MPIIALTASV LEQDKSAAEQ AGMDGFANKP IDFALLTREI ARVLQLNPPQ AEFESLQPLG NQLVDEAKGV KLWGSKPQFI KELMKFIAQW PEKSQALQQA ISEQDTATIK LLSHSLKGVS GNLGLLQWMS YFAQLEKLTQ AESLSFEAME AIIAKISDSL VEIGDYIEST TVSSASGSEL AQSGTDDPAQ LLAHIDALLA SVVHHSFDES DLEALTARID EHLRLSVTII TEALDNFDFD IAHNELLELR RIITANQE
|
| |