Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3215 |
Symbol | |
ID | 4254972 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 3807663 |
End bp | 3809453 |
Gene Length | 1791 bp |
Protein Length | 596 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638123899 |
Product | flavocytochrome c |
Protein accession | YP_739256 |
Protein GI | 114048706 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01813] flavocytochrome c |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.57421 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCACAA GAAAGATTCA AAAAACAGCA CTAGCCATGC TGATCTCTGG TGCGATGGCA GGCACAGCCT ATGCCGCGCC AGAAGTACTA GCCGATTTTC ACGGTGAAAT GGGCGGCTGC GATAGCTGCC ACGTATCAGA TAAAGGTGGC GTGACAAACG ACAACCTGAC CCATGAAAAC GCCCAATGTG TTAGCTGCCA CGGTGATTTA AAAGAACTGG CTGCAGCGAC GCCAAAAGAT AAAGTTTCTC CGCACAAATC TCACTTAATC GGTGAAATCG CTTGTACCAG CTGCCATAAA GGCCACGAAA AATCAGTGAC TTACTGTGAC GCTTGCCACA GCTTCGGCTT CGATATGCCA TATGGCGGCA AGTGGGAACG TAAATTTGTG CCTGTTGATG CAGACAAAGC GGCTCAAGAT AAAGCCATTG CCGCTGGCGT GAAAGAAACC ACAGACGTCG TGGTTATCGG TTCGGGTGGT GCAGGTCTTG CTGCCGCCGT TTCAGCCCGT GATGCTGGCG CGAATGTGAT TCTGTTAGAA AAAGAACCTA TCCCAGGTGG TAACACTAAA CTGGCTGCCG GCGGTATGAA CGCTGCAGAA ACTAAGCCAC AGGCTAAGTT AGGTATCGAA GATAAGAAAC AAATCATGAT CGACGACACC ATGAAAGGTG GTCGTAACAT CAACGATCCT GAATTAGTGA AAGTCTTGGC CAACAACTCT TCAGACTCTA TCGATTGGTT AACCGCTATG GGTGCCGACA TGACTGACGT GGGCCGTATG GGTGGCGCAA GCGTTAACCG TAGTCACCGT CCAACCGGTG GTGCGGGTGT GGGTGCGCAC GTTGCACAAG TGCTGTGGGA CAATGCCGTT AAACGTGGTA CTGACATTCG TTTAAACAGC CGTGTTGTAC GCATCCTTGA AGATGCAAGC GGCAAAGTGA TCGGCGTTTT AGTGAAAGGT GAATACACTG GCTACTATGT GATCAAGGCC GATGCAGTCG TGATCGCTGC CGGTGGTTTT GCGAAAAACA ACGATCGCGT CGCTAAGTAC GATCCTAAGT TAAAAGGCTT TAAAGCGACT AACCACCCAG GTGCAACCGG TGACGGCTTA GACGTTGCTC AGCAAGCGGG CGCCGCAACT CGTGACTTAG AATACATCCA AGCTCACCCA ACTTACTCAC CAGCCGGTGG TGTGATGATC ACCGAAGCGG TACGTGGTAA CGGTGCTATC GTGGTTAACC GTGACGGTAA CCGCTTCATG AACGAAATCA CGACCCGAGA TAAAGCGTCT GCAGCGATTC TGCAACAGAA AGGCGAAAGC GCTTACCTTG TATTCGATGA CTCTATCCGT AAGAGCTTAA AAGCCATCGA AGGCTATGTT CACTTGAACA TCGTTAAAGA AGGCAAGACC ATCGAAGATT TAGCGAAACA ACTCGATGTG CCAGCCGCTG AACTGGCGAA AACCGTCACT TCTTACAACG GTTTTGTGAA ATCAGGTAAA GACACACAAT TCGAGCGTCC AAACCTGCCA CGTGAAATCG CCACTGCGCC TTTCTATGCC TTAGAAATCG CACCAGCGGT TCACCACACT ATGGGTGGTA TCGTTATCGA TACTCAAGCC GAAGTGAAGA GCGATAAAAC CGGTAAACCT ATCAGCGGTT TATACGCAGC TGGTGAAGTA ACTGGTGGTG TTCACGGTGC TAACCGTTTA GGTGGTAACG CCATCTCTGA TATCGTGACC TATGGCCGTA TCGCGGGTGC ATCTGCCGCG AAATACGCGA AAGACCACTA G
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Protein sequence | MFTRKIQKTA LAMLISGAMA GTAYAAPEVL ADFHGEMGGC DSCHVSDKGG VTNDNLTHEN AQCVSCHGDL KELAAATPKD KVSPHKSHLI GEIACTSCHK GHEKSVTYCD ACHSFGFDMP YGGKWERKFV PVDADKAAQD KAIAAGVKET TDVVVIGSGG AGLAAAVSAR DAGANVILLE KEPIPGGNTK LAAGGMNAAE TKPQAKLGIE DKKQIMIDDT MKGGRNINDP ELVKVLANNS SDSIDWLTAM GADMTDVGRM GGASVNRSHR PTGGAGVGAH VAQVLWDNAV KRGTDIRLNS RVVRILEDAS GKVIGVLVKG EYTGYYVIKA DAVVIAAGGF AKNNDRVAKY DPKLKGFKAT NHPGATGDGL DVAQQAGAAT RDLEYIQAHP TYSPAGGVMI TEAVRGNGAI VVNRDGNRFM NEITTRDKAS AAILQQKGES AYLVFDDSIR KSLKAIEGYV HLNIVKEGKT IEDLAKQLDV PAAELAKTVT SYNGFVKSGK DTQFERPNLP REIATAPFYA LEIAPAVHHT MGGIVIDTQA EVKSDKTGKP ISGLYAAGEV TGGVHGANRL GGNAISDIVT YGRIAGASAA KYAKDH
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