| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3206 |
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| Symbol | rumB |
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| ID | 4256235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 3800183 |
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| End bp | 3801337 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638123890 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_739247 |
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| Protein GI | 114048697 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.520782 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTACAT TAGTACAATG TGGGTATTTT GAACGAGGCC AATGCCAATC CTGTCGCCAT
ATTAAGCTCC CTATGGCGCA GCAACTGGCG GCCAAAACCC AAGAATTGCA GCAATTGTTA
GCGCCTTTTG TCGATAACGC CGAAGCGCAG TTTTTACCCC CGGTTGTAGG TGACAGCAGC
GGTTTTCGTA ACAAGGCGAA AATGGTCGTC TTGGGCGCCG CCCATGCTCC TGTACTGGGG
ATTGTCAGCC CCAGCGGCGA GGCGGTGAGC CTGTGTGACT GTCTGTTGTA TCCTGCTGAT
ATGCAAGCCT TACTCCACCG TTTAGAGCGC TTTGTTCAGC AGGCGGGCAT TCCGCCTTAC
CGTGTCGATA AAGCCAAGGG CGAGCTTAAA TTTATCCTAC TGACGCGCAG CCAAGTGCGC
GGCGAGTATA TGCTGCGGTT TGTGCTGCGC TCGCGGGATG CCATCGCCCG TATCGAGCGT
GAATTGCCAG CGCTGATGGC CGAATATCCG CAGATCAAAG TTGTCTCAGT CAATTTGCAG
CCTATTCATA TGGCCATCTT GGAGGGGGAG GAGGAGATTT TCCTTACCGA AAACACTCGC
CTCGAAGAGC GCTTTAACGA TGTGCCTTTG TTTATTCGTC CCAAGAGCTT TTTTCAAACC
AACCCGCAGG TCGCGGCAAA GCTGTATCAA ACCGCCCGTG AGTGGGTGGC CGACTTCGCA
CCAGCTTCAC TTTGGGACTT ATTTTGTGGT GTGGGCGGTT TTGGTTTGCA CTGTGCAGCT
AAAGATATCC CATTGACAGG GATTGAAATT GAGGCCGAAG CCATTGCCTG CGCTAAGATG
TCGGCGCAGT TGATGGGGCT GGATAAAGTG CAGTTTATGG CGCTCGATTC CACTGACTTT
GCCAAGGGCG ATGCGGCGCA AACTAAGCCC GAGTTGATTA TTGTCAACCC GCCGCGCCGT
GGGATCGGCG AGTCTCTGTG CCATTCCTTA AGTGAGTTTG CACCTAAGGC GATTTTGTAT
TCCAGCTGCA ATCCTAAAAC CTTAGCCAAA GATCTCGGCC ATATTCGTGG CTATCGGTTA
ACTAAGGTGC AGTTGTTCGA TCTCTTTCCC CACTCGGATC ATTTCGAAGT ATTAGCCTTA
TTAGTGAAAG ACTAA
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| Protein sequence | MSTLVQCGYF ERGQCQSCRH IKLPMAQQLA AKTQELQQLL APFVDNAEAQ FLPPVVGDSS
GFRNKAKMVV LGAAHAPVLG IVSPSGEAVS LCDCLLYPAD MQALLHRLER FVQQAGIPPY
RVDKAKGELK FILLTRSQVR GEYMLRFVLR SRDAIARIER ELPALMAEYP QIKVVSVNLQ
PIHMAILEGE EEIFLTENTR LEERFNDVPL FIRPKSFFQT NPQVAAKLYQ TAREWVADFA
PASLWDLFCG VGGFGLHCAA KDIPLTGIEI EAEAIACAKM SAQLMGLDKV QFMALDSTDF
AKGDAAQTKP ELIIVNPPRR GIGESLCHSL SEFAPKAILY SSCNPKTLAK DLGHIRGYRL
TKVQLFDLFP HSDHFEVLAL LVKD
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