Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3198 |
Symbol | |
ID | 4256227 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 3784011 |
End bp | 3788309 |
Gene Length | 4299 bp |
Protein Length | 1432 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 638123882 |
Product | formate dehydrogenase, alpha subunit |
Protein accession | YP_739239 |
Protein GI | 114048689 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases [COG3383] Uncharacterized anaerobic dehydrogenase |
TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.554904 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGAAC TTCGAATCGA TAATCAGATA GTCACGGCCG AGCCGAACGA TAACCTACTT CGGGCAGCCA GTAAGGCTGG CATAGCAATT CCGAGTCTGT GCGATCCAAC AGACGCCACA CGGCAATTGG GCGCGGCTCC CCATGCCGAT AAACAGGACT GCAACCTCTG CTTAGTGCAA ATCGAAAATA CCGATGCCAG CCTGCGCTGC GTTAAAGCCT GTGAAACGCC CGCCGAAGCG GGCATGAAGG TCATCACCCA ATCGGCATAT TTAACCAAAC AGCGCCAAGC TGCATTGAGC ACAATTTTAA GTGACCACTT TGCCGATTGT GAGGCGCCCT GCCAGCAAGC CTGCCCCGCG GGTGTCGATG TGCAAAGTTA CCTGTACCAC ATTGCCCAAG GCGACCATAG CCAAGCCATT AAAGTCATTA AAGATACCCT GCCGCTGCCG CTGTCGATTG GCCGAGTCTG CCCCGCGTTT TGCGAGACTG AATGCCGCCG CGGCCTCGTC GATGACCCCA TTGCTATTCG TCAACTCAAG CGCCACGCCG CCGATTTAGA CTTGGCCGAC GATGAACAAG GTGGCAGTTA TCAACCACCA CGCCTCGCAG ATACGGGCAA AAAAATTGCC ATTATTGGCG CGGGCCCCGC AGGCTTAAGT GCCGGTTATT ACCTGTCAAA CCAAGGGCAT AGTGTTGAGA TTTTTGAAGC CATGCCCAAG GCGGGCGGCT GGCTGCGCTA CGGGATCCCC GAATACCGTT TACCCAAGGC AATTCTCGAT AAAGAAATAG AGCTGCTATG CCGCAATGGG TTAACCATTC ATACGGATAC TCGTCTCGGC CATGAAATTC ATTTAGCCCA ACTGGTCGCC GATTTCGACG CTGTGTGCCT TGCCATCGGC GCCCAAAAGG CGGTGCCGAT GAACTACAAA GGCTCAGAAC TTGCGGGCTG TTACCTGGGG GTGGATTTTC TTAAGGAACA TTGCCTCGAC AAACAATTGA AGTTGGGCAA AAAAGTCGCC GTGATTGGTG GTGGCAACAC CGCCATCGAC TGCGCCCGCA CCGCCGTGCG CGAAGGCTGC GATGTCACCT TAATCTACCG CCGTACCCGC GCCGAAATGC CCGCCGAAGC CTACGAAGTA CATGAGGCCG AAGTCGAAGG CGTCAAATTC CATTTCTTAA CCAATCCCAT TGAAAATCAT AGCGATGCCA ATGGACAGGT AGAAGCTGTC ACCTTCAGCA AAATGGCGCT CGGCGACGCC GATGCCTCGG GCAGACGCGC GCCCGTGGAC ACTGGGGAAA CCTTTACCGA GGCCTTCGAT ACTGTTATCG CCGCCGTCTC CCAAGCGCCA GATCTGAGTT TTATGCAAGA TCCTATGGGG CAACTCAGCC ATGGCGAGCT GGCGCTGAGC CGCTGGAACA CCCTGATAGG CTGCGAGCAA ACCATGTCAT CGGGTGTAGA AAAACTGTTT GTGATGGGCG ATGCCCGCAG AGGTCCTGCC ACCGCCGTAG CCGCCATTGG CGATGGCCGT AAAGCGGCAA TCGCTATTGA TAAGATGCTA AAAATCGGCC TTAGCTGCGA TTTACATGCC CATGAGTTTA ACTCGGTCAA AACCATTCCA AGCGCCCTCA TTCCAAACGC CCTTAAGCAA ACCGAAACAA GCTCAAAAGC AGGGTCAACG CTTTATCCCC ATACGCCGCG TCAGCCCCGC TTGAAGATGC CCGAACTCAC GGCGCTGCAA CGGCTACTGA ATTACAGTGA AGTCGAGCTA GGCTTTCCCG CAGATGCCGC CATGCAAGAG GCGGCGCGCT GTCTCGAGTG CGCCTGTCAG GCTAATACTG ATTGTAAGCT TAGGGATTAC GCCACGGATT ACGGTGTCGA GGCCAAAAGC TTAGCCACTG AAAATGCACG GCATTTCAGT GTTGATAAGA GTGCCCCCTT TATTCAATTC GATGCCAACC GCTGTATTAG CTGCGGTAAG TGCGTCGATG TGTGTCAGCT GCAGAGTGGC CACTGCGCCA TCCAATTTAG CCAAGATTCC TATCAGGCGC TGCCGCAGGA AATGACTCAA CACATGGAGC GCCGCGCACC GAGAGTCGGC TTTAGTGCGA GCATGGCCGA TAGCCACTGT GTGCAATGTG GTAACTGTGT ACAGGTTTGT CCGACGGGCG CACTGGCCGA TGCCCGGGAT AAACGCCAAG GCGATAGCAC TGAGTTAAAA ACCGCCTCGA CGATTTGTAC TTACTGCGGC GTGGGCTGTC GTCTCGACCT TAAAATCGAC CCCAAAGCCA ATCGCATTCG CCATATCGAA GGCAATAAGG ACTCGGTCGT TAACCAAGGC ATGCTATGTG TTAAGGGACG TTTTGGCTTC GATTTTATTC ACAGCGACAA ACGTCTCACT ACGCCACTAA TACGTAAAAA TGGCGAGCTG CAACCGAGTA GCTGGCCCGA AGCCATCGCC TATGTGGCAA AACGCTTAAC CGAGATAAAA CAAAAAGATG GCAGCAATGC CCTCGCCAGC CTAGCCTCGG CCAAGGCCAC CAACGAAGAT AATTTTGTGC TGCAAAAATT TGTCCGCAGT GTTCTTGGCA CCAACAATAT CGATCACTGC GCCCGCCTAT GCCATTCATC GACGGTAACA GGCTTGCAGC AGAGTATTGG TAGCGGCGCC ATGACCAATG ATATTCCGAG CATTAAGGAC TCGGACGTCA TCTTTATCTT AGGGTCGGAC ACCACCTGCG CCCATCCGAT TATCGCCTCG AAAATTCAGC AGGCGGTGAT GCAGCACGGC GCGCGTTTAC TGGTTGCCGA TCCGAAACGC GTTGGCATTG CCGAAAAGGC CGAGCTGTAT GTCGCCCACA GACCGGGGAC GGATGTGATG CTATTAAACG CCATTATGGC GGAAATTATT CGCCACGATT GGCAGGATAA AGCCTATATC GCCCAGCGTA CCGAAGGCAT TGAGGCCCTC TATGCAGAGT TAGCCAAGGA GGATTACTCC CTCGAAAACG CGGCGCTCAT CACGGGCGTA AAGGCCGAAG ACATTGCCCG CCTCGCGCGC ACCATAGGCA CGGCGCAAAA GACCGCAGTT TATTACGCTA TGGGTATCAC TCAGCATACG ACGGGGCACG ATAACGTCAC GGCTATCTCT AATTTGCAGC TACTTTGCGG CAATATTGGT GTGTCAGGCG CGGGGATTAA TCCACTTCGC GGCCAGAGCA ATGTCCAAGG TGCCTGCGAT ATGGGCGCAC TACCCAACTA TTTTACCGGT TACCAAAAGG TCACGGATAT TCATGCCAGA ATGCGCTTCG AAGACCACTG GCAAACGCCG TTATCGGGGG AGATTGGCGT CACTGCAACC CATATGATGC ACGATATTGC CAAAGGTAAA ATTAAAGCCT TGTATGTAAT GGGCGAGAAT CCCGTGCTCA GCGACCCCGA CCAAGCCCAC GTACTTAATG CATTGAGCAA AATCGATTTT CTGGTGGTGC AGGATATCTT TTTAACCGAG ACGGCCGAGC TTGCCCATGT GGTCTTGCCC GCCGCCGCAT TCGTGGAAAA ACGCGGTCAC TTTACCAATA CCGAGCGTCG GGTGCAGCGA CTCGAGCAGG CGCTCGCCTC ACCGGGTGAA GCCTTGCCCG ATTGGCAGAT AGTGCAAGCT GTCGCTAATG CCATGGGTGC TAACTGGGAC TATGCCAACG AAGAAGCTAT CTGGCGCGAG ATCAACGAGC TTACTCCGCA GTATCGCGGT ATTCGCTGGG ACAGATTAAG TGCCAATGCC GAAGGTCAAA TCTCTCAAGG GATTCAATGG CCCTGTCCAG ATGAAACCCA TCCTGGGACG CCGATTATGC ACCAGAGCCA ATTCACTCGA GGCTTAGGCT TATTTACCCC CGTCAGTTAT CGCCTACCTG CTGAGATGCC CTGCAACGAG TATCCGCTGA CGCTATCAAC GGGGCGCCTG TTGGAGCAAT TCCACACGGG CACACTCACC CGTAAAACAC CTGGGCTGGA TTTACTCGGT TCACCTAAGG TGATGATTTC TGTCTATGAT GCGGAGCAAC TGGGGATACA TAACGGCGAT AAACTTCGCC TCACTACCCG CCGCGGAGAG ATTGAAATCG ATGCCTTTGT GACTAAACGC GCCCAAGCTG GGGTGCTGTT CCTGCCATTC CATTTTGTGG AAGCAGCAGC GAATAAACTC ACCATTAATG CGCTCGACCC TGTGGCTTAT ATTCCCGAAT ATAAGGTTTG TGCGGTCAGG GCTGAAAAGG TGACAACAAA CGTGAGTGAA ACAGCCTAA
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Protein sequence | MIELRIDNQI VTAEPNDNLL RAASKAGIAI PSLCDPTDAT RQLGAAPHAD KQDCNLCLVQ IENTDASLRC VKACETPAEA GMKVITQSAY LTKQRQAALS TILSDHFADC EAPCQQACPA GVDVQSYLYH IAQGDHSQAI KVIKDTLPLP LSIGRVCPAF CETECRRGLV DDPIAIRQLK RHAADLDLAD DEQGGSYQPP RLADTGKKIA IIGAGPAGLS AGYYLSNQGH SVEIFEAMPK AGGWLRYGIP EYRLPKAILD KEIELLCRNG LTIHTDTRLG HEIHLAQLVA DFDAVCLAIG AQKAVPMNYK GSELAGCYLG VDFLKEHCLD KQLKLGKKVA VIGGGNTAID CARTAVREGC DVTLIYRRTR AEMPAEAYEV HEAEVEGVKF HFLTNPIENH SDANGQVEAV TFSKMALGDA DASGRRAPVD TGETFTEAFD TVIAAVSQAP DLSFMQDPMG QLSHGELALS RWNTLIGCEQ TMSSGVEKLF VMGDARRGPA TAVAAIGDGR KAAIAIDKML KIGLSCDLHA HEFNSVKTIP SALIPNALKQ TETSSKAGST LYPHTPRQPR LKMPELTALQ RLLNYSEVEL GFPADAAMQE AARCLECACQ ANTDCKLRDY ATDYGVEAKS LATENARHFS VDKSAPFIQF DANRCISCGK CVDVCQLQSG HCAIQFSQDS YQALPQEMTQ HMERRAPRVG FSASMADSHC VQCGNCVQVC PTGALADARD KRQGDSTELK TASTICTYCG VGCRLDLKID PKANRIRHIE GNKDSVVNQG MLCVKGRFGF DFIHSDKRLT TPLIRKNGEL QPSSWPEAIA YVAKRLTEIK QKDGSNALAS LASAKATNED NFVLQKFVRS VLGTNNIDHC ARLCHSSTVT GLQQSIGSGA MTNDIPSIKD SDVIFILGSD TTCAHPIIAS KIQQAVMQHG ARLLVADPKR VGIAEKAELY VAHRPGTDVM LLNAIMAEII RHDWQDKAYI AQRTEGIEAL YAELAKEDYS LENAALITGV KAEDIARLAR TIGTAQKTAV YYAMGITQHT TGHDNVTAIS NLQLLCGNIG VSGAGINPLR GQSNVQGACD MGALPNYFTG YQKVTDIHAR MRFEDHWQTP LSGEIGVTAT HMMHDIAKGK IKALYVMGEN PVLSDPDQAH VLNALSKIDF LVVQDIFLTE TAELAHVVLP AAAFVEKRGH FTNTERRVQR LEQALASPGE ALPDWQIVQA VANAMGANWD YANEEAIWRE INELTPQYRG IRWDRLSANA EGQISQGIQW PCPDETHPGT PIMHQSQFTR GLGLFTPVSY RLPAEMPCNE YPLTLSTGRL LEQFHTGTLT RKTPGLDLLG SPKVMISVYD AEQLGIHNGD KLRLTTRRGE IEIDAFVTKR AQAGVLFLPF HFVEAAANKL TINALDPVAY IPEYKVCAVR AEKVTTNVSE TA
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