Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3196 |
Symbol | lysS |
ID | 4256225 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 3780865 |
End bp | 3782367 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638123880 |
Product | lysyl-tRNA synthetase |
Protein accession | YP_739237 |
Protein GI | 114048687 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0568381 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGAAC AAGTACAAGA TGAAAACAAA CTGATTGCCG AGCGTCGTGC CAAGCTAGAA AGCATTCGCC CGAACTGCAG CGCTAATGCT CACCCTAATA CTTTCCGTCG CACCCACAAA GCGGCTGAGT TGCAGGAAAA ATACGGTCAA AACACTAAGG AAGAACTCGA AGCCTTAGGT TTTAAAACCA GCATCGCTGG CCGTATCATG GCAAAACGTG GCCCATTCCT GGTGATCCAA GACGTGTCTG GTCGTATCCA AGCTTACGCT GAAAAGGGCG TTCAAGCGGA TCTGAAAGAC CGTTACCAAG GTTTGGATAT CGGTGACATC ATCGGCGTAA CCGGTCAGTT ACACTTGTCT GGTAAAGGCG ATCTGTACGT GAACATGGAA GAGTACCAAC TGCTGACCAA AGCACTGCGT CCTCTGCCAG AAAAATTCCA CGGCCTGACC GACCAAGAAA CTCGTTACCG CCAACGTTAT GTGGACTTAA TCGTTAACGA AGAATCTCGT CAAGCCTTCG TCATGCGTTC AAAAGTGGTT GCAGCTATCC GTAACTTCAT GATCAAAAAA GAGTTCATGG AAGTTGAAAC CCCAATGATG CACGTGATCC CAGGCGGCGC TTCAGCCCGT CCATTTATCA CTCACCACAA TGCGCTGGAC ATGCCAATGT ACCTGCGTAT CGCGCCAGAG TTATACCTCA AGCGTTTAGT GGTAGGTGGT TTTGAGCGCG TGTTCGAAAT CAACCGTAAC TTCCGTAACG AAGGTCTGTC GCCACGCCAT AACCCAGAAT TCACTATGAT GGAATTCTAT ATGGCCTATG CAGACTACAA AGATCTGATG GACTTAACCG AAGAACTGTT AAGCTCTATC GCGATTGAAC TGTTAGGCAG CGCGCAAATG CCATACGGCG AGCACACTGT TGATTTCGGT GGCCCATATG CCCGTTTAAG CATGTTAGAA GCGATTCAGA AGTACAATCC TGACAACGCA ACTATCCAAG CCATGACCTA CGAGCAAGTG AAAGATCTTG AATTCATGCG TGAACTGGCT ATCAGCCTAG GTATCAAGAT CGAGAAGTTC TGGACCTGTG GTCAGCTATT AGAAGAAATC TTCGGTGAAA CCGCTGAATG GCAGTTAATG CAACCGACTT TCATCACAGG CTACCCAGCG GACATTTCGC CACTGGCACG TCGTAACGAT GACAATCACT TCATCACTGA CCGTTTCGAA TTCTTCATCG GTGGCCGTGA AGTGGCTAAC GGTTTCAGCG AGTTAAACGA TGCTGAAGAC CAAGACAGCC GCTTTAAGGC GCAGGTTGAT GCGAAAGACG CAGGTGACGA CGAAGCCATG TTCTACGATG CAGACTACAT CACTGCACTG GAACACGGTT TACCACCAAC AGCGGGTCAA GGTATCGGTA TCGACCGTTT AGTGATGCTA TTCACTAACA CTCATACTAT CCGTGACGTG ATCCTGTTCC CAGCGATGCG CCCACAGGCC TAA
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Protein sequence | MTEQVQDENK LIAERRAKLE SIRPNCSANA HPNTFRRTHK AAELQEKYGQ NTKEELEALG FKTSIAGRIM AKRGPFLVIQ DVSGRIQAYA EKGVQADLKD RYQGLDIGDI IGVTGQLHLS GKGDLYVNME EYQLLTKALR PLPEKFHGLT DQETRYRQRY VDLIVNEESR QAFVMRSKVV AAIRNFMIKK EFMEVETPMM HVIPGGASAR PFITHHNALD MPMYLRIAPE LYLKRLVVGG FERVFEINRN FRNEGLSPRH NPEFTMMEFY MAYADYKDLM DLTEELLSSI AIELLGSAQM PYGEHTVDFG GPYARLSMLE AIQKYNPDNA TIQAMTYEQV KDLEFMRELA ISLGIKIEKF WTCGQLLEEI FGETAEWQLM QPTFITGYPA DISPLARRND DNHFITDRFE FFIGGREVAN GFSELNDAED QDSRFKAQVD AKDAGDDEAM FYDADYITAL EHGLPPTAGQ GIGIDRLVML FTNTHTIRDV ILFPAMRPQA
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