| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3139 |
|---|
| Symbol | |
|---|
| ID | 4257093 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 3717850 |
|---|
| End bp | 3719454 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638123823 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_739180 |
|---|
| Protein GI | 114048630 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000126557 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATACG ATCAAGAGTC ACAACTCGAA CTTGGCAAAT ACTCATCACT CATAGACTTA
ATCGAACGCA CTAGCCAACG CTTTGGCGAT AAAACGGCAT ATGCTTGTTT GGGGAAAACC
AGCAGCTTCA ATGATATAGA GCGCGATTCA CGCTATTTTG CCGCCTATTT GCAGAATAAC
ACTAACCTAA AACCCGGCGA TCGGATCGCG ATTCAATTAC CCAATATTAC CCAGTTTGTT
ATCGCTGCCT ATGGTGCGCT GCGGGCGGGA CTAATCCTAG TCAACACTAA CCCGCTCTAC
ACTGAACGAG AGCTTATTCA TCAGTTTAAT GACTCAGGTG CTAAGGCCTT AGTGGTGCTG
TCGGATCTGT TGCCAACCCT TGCCAAAGTG GTTGCGACCA CACCAATTGA ATTGGTGATT
TCCACTCACC CGTTAGATCT TATCGATCCG CAGGTGCAGC CCAAAACGGG GCTTAAAAAT
GTCGAATTCT GTCATGTGCT AAAACAAGGG TCCGAGCTAC CCTTTAACCG TGTAGCCCCT
GCCGCAGGTG ACTTAGCGGC GCTGCAATAT ACAGGTGGCA CAACGGGCCT CTCCAAGGGT
GCCATGCTGA CCCACGGTAA TATGCTCGCC AATGCGGCGC AGGTAAAATC CCGCATCGGC
AGTGTTATCA GTGAAGGGGA AGATATTTTT GTCGCGCCAC TGCCGATTTA CCATATCTAC
GCCTTTATGG TGAACTTAGT ACTGTATTTT GAATGTGGTG GTTGCTCGGT ATTAATCCCC
AATCCCCGTG ATATTAATGG CTTAATCAAG ACACTGGCGA AATACCCTTT TACCGGCTTT
GCAGGGCTTA ACACCCTCTT TGTCGCCCTG TGCCATCAGC CAGAGTTTAA GGCGCTAGAT
TTCAGTCATT TAAAAATCAC TATTTCGGGT GGTACGGCAC TCACCGCGGC CGCAGCCAAT
ATCTGGCAAC AAACCACGGG CAATACCATC AGTGAAGGTT ATGGATTATC CGAAACCTCA
CCGGTAATTT CACTCAATGC TCCCGGATAT CAGAAGATTG GCACTATCGG TAAGCCTGTT
CTCGGCACTG AGGTCAAACT GTTAGATGAA AACGGCAATG AAGTCGCGCA AGGGGAAGCT
GGCGAACTCG CGGCCCGCGG CCCGCAAGTG ATGCTGGGTT ATTGGAATAA TCCCCAAGAA
ACGGCCAATG TAATGACTGC CGATGGTTTC TTTAAAACCG GGGATATTGC GATTTTGAAC
GAGGAAGGAT TCCATCAAAT CGTTGATCGC AAAAAGGATA TGATTATCGT CTCCGGCTTT
AACGTCTATC CGAATGAGGT CGAAAACGTG CTCGCCAGCC ATCCGAATAT CATTGAATGT
GCCGTGGTTG GTGTAAAGGA TGAACACTCA GGAGAAGCGG TCAAAGCCTT TGTTGTACTT
AAGGATGACA GCCAAGATCA TGAGCAAATG AAAACCGCCA TTCTCAACTT CTGCCGCGAG
CAACTCACCG CCTACAAGCT GCCCAAGTTG ATTGAGTTTA TGCCGCAGCT ACCTAAGAGT
ACCGTGGGTA AAATCCTGCG CCGAGAACTG AAACATCAGG CTTAA
|
|---|
| Protein sequence | MAYDQESQLE LGKYSSLIDL IERTSQRFGD KTAYACLGKT SSFNDIERDS RYFAAYLQNN
TNLKPGDRIA IQLPNITQFV IAAYGALRAG LILVNTNPLY TERELIHQFN DSGAKALVVL
SDLLPTLAKV VATTPIELVI STHPLDLIDP QVQPKTGLKN VEFCHVLKQG SELPFNRVAP
AAGDLAALQY TGGTTGLSKG AMLTHGNMLA NAAQVKSRIG SVISEGEDIF VAPLPIYHIY
AFMVNLVLYF ECGGCSVLIP NPRDINGLIK TLAKYPFTGF AGLNTLFVAL CHQPEFKALD
FSHLKITISG GTALTAAAAN IWQQTTGNTI SEGYGLSETS PVISLNAPGY QKIGTIGKPV
LGTEVKLLDE NGNEVAQGEA GELAARGPQV MLGYWNNPQE TANVMTADGF FKTGDIAILN
EEGFHQIVDR KKDMIIVSGF NVYPNEVENV LASHPNIIEC AVVGVKDEHS GEAVKAFVVL
KDDSQDHEQM KTAILNFCRE QLTAYKLPKL IEFMPQLPKS TVGKILRREL KHQA
|
|---|
| |