Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3135 |
Symbol | |
ID | 4255110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 3713226 |
End bp | 3714692 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638123819 |
Product | Fis family transcriptional regulator |
Protein accession | YP_739176 |
Protein GI | 114048626 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCTCTA CACAGCCCGC CGCAATGCCC TTGGATAAAC ATTTTCTGCC AGAGAACCAG CTACTGCTCA ATGCCGTGGG TGAAGGCATT TATGGGTTTG ATTTAAATGG TAATGCCGTC TTCATCAATC CCGCCGCCGA GCGCATGACG GGCTGGAAGA ATGAAGAATT ACTCGGCAAA AATATCCATA ATTGCCATCA TCATAGCCAT GCAGATGGCA GTCATTATCC CCAAGAAGAT TGTCCCATCT ACAACACCTT GAAGGATGGA ATAGCAAGGG AAATCACCCA CGATGTGTTT TGGCGCAAAG ATGGCAGTAG CTTTCCAGTG CATTACAGCT CGACCCCCGT CTATCGGGAC AACAAGCTTA TCGGCGTAGT CGCGATATTT CGCGACATCA GTATTCAGAA ACAAACCGAG CAGTCGCTAC GTCAAGCTTT AGCACAGGTT CAAGCCCTGT CGGAGCAACT GGCCAGCGAG AATCACTATC TCCAAGCCGA GTTAGCCGAT AAGACCGGCG ATGTGGATAT TTCGGGCAGC AGCGCGGTGA TCCGCCATAT GATCAAGCAG CTGCATATGG TGGCCAATAC TGACAGTACC GTATTGATTT GTGGTGAAAA TGGCACAGGC AAAGAACTGG TTGCCCGTAA CTTACATCAA CTGAGTCGCC GTAAAGATAA GCCCATGATC AGCGTTAACT GCGCGGCGTT TTCAGCCTCG CTGTTAGAGA GTGAGTTGTT TGGCCATGAG AAAGGCGCCT TTACTGGCGC GACACAGCAG CGCAAGGGCC GCTTCGAACT CGCCCATCAA GGCACACTGT TTCTCGATGA GGTGGCCGAA TTAAGTTTGG AGGCGCAATC TAAGTTGCTG CGAGTGATCC AAGAGCAGTC CTTCGAACGA CTCGGCGGCA GTGAAACCAT TAAGGTCGAT ATTCGCTTAG TCGCCGCCAG TCACCATGAT TTACTCAAGC GCGTTGAACA GGGTTTATTC AGGATGGATC TCTATTACCG CTTGAATGTC TTCCCAATCC AAGTGCCGCC GCTGAGGGCA AGACTTGAGG ACATGCCCGA GCTTGTCAGC CACATTTTGC ATTCCCTAAA CCGCAAACTC GGTAAGAAAC TGCGCGGCGT GAGCCAAAAA GGTCTGCAAA AACTGATGGC CTACAGCTGG CCGGGCAATG TGCGCGAATT GCAAAATATC CTCGAGCGGG AGGCCATTTT ATCTCAAACG GATATTTTAC AAATCCATGC TATGCCCACG AATCACCTGC AGACTCAAAC CGCGGCCTCA CCATTACAAA CCTTGGCCGA GGCGGAAGCA CAACACATAG AGCAAACATT AAAGCAGCTC AACTGGCGTA TTTCGGGCCC AAATGGTGCG GCCAATGTGC TCGGCGTCCC GCCAAGTACA CTCAGATCGC GGATGAAGAA GCTCGGGATT ACACGTCAAA CCCCTGCGGA AGAATAA
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Protein sequence | MTSTQPAAMP LDKHFLPENQ LLLNAVGEGI YGFDLNGNAV FINPAAERMT GWKNEELLGK NIHNCHHHSH ADGSHYPQED CPIYNTLKDG IAREITHDVF WRKDGSSFPV HYSSTPVYRD NKLIGVVAIF RDISIQKQTE QSLRQALAQV QALSEQLASE NHYLQAELAD KTGDVDISGS SAVIRHMIKQ LHMVANTDST VLICGENGTG KELVARNLHQ LSRRKDKPMI SVNCAAFSAS LLESELFGHE KGAFTGATQQ RKGRFELAHQ GTLFLDEVAE LSLEAQSKLL RVIQEQSFER LGGSETIKVD IRLVAASHHD LLKRVEQGLF RMDLYYRLNV FPIQVPPLRA RLEDMPELVS HILHSLNRKL GKKLRGVSQK GLQKLMAYSW PGNVRELQNI LEREAILSQT DILQIHAMPT NHLQTQTAAS PLQTLAEAEA QHIEQTLKQL NWRISGPNGA ANVLGVPPST LRSRMKKLGI TRQTPAEE
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