| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3114 |
|---|
| Symbol | pdxA |
|---|
| ID | 4257155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 3695078 |
|---|
| End bp | 3696064 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638123798 |
|---|
| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| Protein accession | YP_739155 |
|---|
| Protein GI | 114048605 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.591957 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACCACTA AACGTATTGC CGTTACTCCC GGAGAGCCTG CGGGTATCGG CCCCGATTTA
GTCGTGCAAC TCGCTCAGCA GGCTTGGCCT GCTGAGTTAG TCGTTTGTGC GGATCCCGAA
TTATTAGCCA GCCGAGCTAA ACGACTCGGC CTAAACGTCG CTTTTCGTCC TTATCAGCCC
GAGCAAGCGC CCAAGCCACA AGAAGCTGGC ACGCTGACCA TAGCGCCATT CAAACTGGTG
ACAGACGCCG TTTGCGGTCA GCTCGATGAG CAGAACAGTG CTTACGTGGT TGAAACCCTA
CGTTATGCGG GTGAAAAAAA CATGAGCGGC GAATTTGATG CCGTTGTCAC TGGCCCAGTC
CATAAAGGGA TCATCAACCA AGCGGGGATT TCCTTTAGCG GCCATACCGA GTTTTTTGCC
CATCAGGCCA ACTGCCCCGA TGTGGTCATG ATGTTAGCGA CCCAAGGTTT ACAGGTGGCA
CTGGTGACCA CCCATATCCC TCTGGCCTAT GTGGCAAAAG CCATTACGCG CCAGCGTTTG
CATCATATTA TCAAGATTTT ACACGCTGAC CTTATCAGCA AGTTTGCCAT TGCTTCACCC
AAAATTTATG TCTGTGGATT AAACCCACAC GCGGGTGAAG ACGGCCATCT TGGCCGGGAA
GAAATCGATG TGATTATTCC GGCACTGAAC GAACTACGTG AAGAATATCA AATGAACATT
GTCGGCCCCC TACCCGCCGA TACCCTGTTC CAACCTAAAT ATTTACAGGA CGCGGATGTC
GTGTTGGCCA TGTACCATGA CCAAGGCTTA CCCGTTCTAA AGTCACAGGG ATTTGGCAAA
TCGGTCAACA TTACCTTAGG TTTACCTTAT ATCCGTACCT CGGTTGACCA TGGTACGGCG
CTCGATCTTG CGGGAACTGG CAAAGCCGAT ATTGGCAGTT TTGTCTGCGC CTTGAATAAA
GCCATTGAGT TATCCTCAAA AAACTAA
|
|---|
| Protein sequence | MTTKRIAVTP GEPAGIGPDL VVQLAQQAWP AELVVCADPE LLASRAKRLG LNVAFRPYQP
EQAPKPQEAG TLTIAPFKLV TDAVCGQLDE QNSAYVVETL RYAGEKNMSG EFDAVVTGPV
HKGIINQAGI SFSGHTEFFA HQANCPDVVM MLATQGLQVA LVTTHIPLAY VAKAITRQRL
HHIIKILHAD LISKFAIASP KIYVCGLNPH AGEDGHLGRE EIDVIIPALN ELREEYQMNI
VGPLPADTLF QPKYLQDADV VLAMYHDQGL PVLKSQGFGK SVNITLGLPY IRTSVDHGTA
LDLAGTGKAD IGSFVCALNK AIELSSKN
|
|---|
| |