Gene Shewmr7_3049 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3049 
Symbol 
ID4257299 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp3616121 
End bp3617077 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content46% 
IMG OID638123727 
Producttransaldolase B 
Protein accessionYP_739090 
Protein GI114048540 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00874] transaldolase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00546599 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.166064 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAATA CATTAGAGCA ACTCAAGTCA TACACTACGA TTGTGGCCGA TACTGGCGAT 
ATTGAAGCGA TCAAACGCTA TCAGCCAGAA GACGCAACGA CCAACCCATC ACTCATTTTA
AAAGCGGCTC AAATTCCCGA GTATAGCGCT CTAATCGACA ATGCTATCGC ATGGGCTAAA
TTACAAAGTG CTGATATTGA GCAACAGATT GATGATGCCA GCGATAAACT TGCAGTGAAC
ATTGGTGTCG AGATCCTAAA ACTGGTCCCA GGCCGTATTT CGACCGAAGT GGATGCCCGC
TTATCCTTCG ATAAAGAAAA ATCCATTGCC AAAGCGCATA AGCTAGTACG TCTGTACCAA
GAAGCGGGCG TGGATAAATC TCGCATTCTG ATTAAATTAG CCTCAACTTG GGAAGGCATT
TGTGCCGCCA AAGAGTTAGA GCAAGAAGGT ATCAACTGTA ACTTAACTCT ACTATTTAGC
TTCGCTCAAG CACGTGCCTG TGCAGAAGCG GGCGTGTACT TAATTTCTCC ATTCGTTGGT
CGCATACTCG ACTGGTACAA AAAAGACACA GGTAAAGACT ATGACGCAGT AAATGACCCG
GGTGTTGTTT CTGTGACTGA AATTTACAAT TACTACAAAC AGCATGGCTA TAACACAGTA
GTCATGGGTG CAAGTTTCCG TAATATCGGT GAAATCATCG AATTAGCAGG CTGTGATCGC
CTGACTATTG GCCCTTCATT ACTCGAAGAG CTGGCAAACT CTCAAGTTGC TATTCAACCT
AAACTCATTC CTGCCAGCAC CACAGTTGCT GCCGGTGAGC CGTTAACCGA AGCGCAATTC
CGCTGGGACT TCAACCAAGA TCCTATGGCT GTCGACAAGT TAGCAGAAGG TATCCGTAAC
TTCGCCATCG ACCAAGGCAA ACTCGAAGTC ATGCTCAAGG CAAAACTGGC AAACTAA
 
Protein sequence
MANTLEQLKS YTTIVADTGD IEAIKRYQPE DATTNPSLIL KAAQIPEYSA LIDNAIAWAK 
LQSADIEQQI DDASDKLAVN IGVEILKLVP GRISTEVDAR LSFDKEKSIA KAHKLVRLYQ
EAGVDKSRIL IKLASTWEGI CAAKELEQEG INCNLTLLFS FAQARACAEA GVYLISPFVG
RILDWYKKDT GKDYDAVNDP GVVSVTEIYN YYKQHGYNTV VMGASFRNIG EIIELAGCDR
LTIGPSLLEE LANSQVAIQP KLIPASTTVA AGEPLTEAQF RWDFNQDPMA VDKLAEGIRN
FAIDQGKLEV MLKAKLAN