| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3035 |
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| Symbol | |
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| ID | 4256415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 3598787 |
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| End bp | 3599347 |
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| Gene Length | 561 bp |
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| Protein Length | 186 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638123713 |
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| Product | type IV pilus modification protein PilV |
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| Protein accession | YP_739076 |
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| Protein GI | 114048526 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4967] Tfp pilus assembly protein PilV |
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| TIGRFAM ID | [TIGR02523] type IV pilus modification protein PilV
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0760005 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTAAAT GTGGACATTT GACACTTACA AAATACCAAC AGGGCATTTC GTTGATCGAA
GTGCTGGTCG CATTGGTGAT CTTAGTCATC GGCTTAATTG GTATTTTCAA CCTGCATATC
GTTGCTAAAC GCGGCAGTTT TGAGTCATTT CAACAGACTC AAGCATCTTA CTATGCCACT
GATATAATTA ATCGAATGAA GCTCAATCGC ACTGAATTAG CGAACTATAA TGGAACCTAT
AGCGGAACTC CCACTGCGGT GAGTAAAGCC TGTGAGGATA ACACTTTGTG CAATCCTGCT
GAGCTGAAAA GTTGGGATAT TTTTGAATGG CAGTCGTTGT TTATTGGGGC TGCTGAAACA
GTAGGTAGCC TGAATGTAGG TGGTCTGGAT ACTCCAACAG CTTGTGTTCA AGTTGTTGGT
AATGATGTTT TAGTAGCCAT TGTATGGAAG GGAATTAGTA GCACAAACAT TGATACGTCC
GCAATTGAGG ATACAGTTGT GTCATGTGGT TCAGGGACAC CAAATCGTCG TATTTTTTCA
ATAAGAACAG TGATTATATA G
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| Protein sequence | MTKCGHLTLT KYQQGISLIE VLVALVILVI GLIGIFNLHI VAKRGSFESF QQTQASYYAT
DIINRMKLNR TELANYNGTY SGTPTAVSKA CEDNTLCNPA ELKSWDIFEW QSLFIGAAET
VGSLNVGGLD TPTACVQVVG NDVLVAIVWK GISSTNIDTS AIEDTVVSCG SGTPNRRIFS
IRTVII
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