| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3032 |
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| Symbol | |
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| ID | 4256412 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 3593656 |
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| End bp | 3597306 |
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| Gene Length | 3651 bp |
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| Protein Length | 1216 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638123710 |
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| Product | type IV pilin biogenesis protein, putative |
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| Protein accession | YP_739073 |
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| Protein GI | 114048523 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.765671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.129147 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTA ATCAATACTT ATTTGCTGGT TTTGTAGTGG CTTTAGCTGT TCCAGCCCAT
ACTTTGGCGG ATGATACCGA TATCTATCTC AATCCAGCTC AAAATAATAT CAGGCCACAA
GTACTTATTA TTTTTGATAA TTCAGCCAGT ATGGACACTA TGGTTGAGGG GTTACCGGGT
GGATATAAGC CAAATGTGAC ATATACGCCA TTAGACAGTG CTAACTCTTA TCAAGATGAT
ATGATTTATT TTACGGTGGG AACGGGATTA GATGAGTCGG GTTTAGGGAT ACCTGATAGT
CCATCGGAAA CAAATCGATT CAACCTCAAG GTTAATGCTT GTAATGAAGC AACAAAAGCT
TTAACAGACT ATGGTCGTTT TTCTGGCCAT TTCGGTGAAT ACTCCACCAA TGGTAATGGG
AAAGGGACTT GGCAATTGGT TAAAGAAAAC TCAGGTAATG AAGTCCAAAA ACCGATTGAC
TGTTGGGAAG ATATTTTAGC TACAAACTCG AGCAACAATA ATGTTCAGTT TACTGATACT
GTTTCTGCGA CAGGTTATCC ACAAAATAGT GTGGTAATTG GTAGTGGTAA CAATGCTCTT
TATTCTCCTT GGGGGGCAAA AGATTCAGCT AGTGCAGCTA ATTTGAGTGG TGGAACGCTA
ATAACGCTTT ATACAGCTAA TTATTTACGT TGGTATCGAC ATTACCAAAA AGATGTGGCA
AGTGGTACTA CGGATCCTAA TTCTCAGCAA ACAAGACTCG CAATAGCTAA AGATGCTATT
TCTAGTGTGA TAAGCACCGT TCCTTCAATT GATTTTGGTT TGGCCGTATA TAATATGAAT
TACCCCAGAG AATATGATAG GGATGGTGGT CGTATTGTTG CGGGGATTAA ATCCCGAACC
GCAGCAGAAA AAACTACACT GATTAATACA ATTACCCAAT TGCCAGCGGA TACAAATACC
CCCCTATGTG AAACCTTATT TGAAGCTTAC AGTTATTTTA GTGGTGGGAA AATACAGTTT
GGACACTCAG ATTCAAACTA TAAAGATGCT AGTAATAAAA TAGATTATAC GGCTAATCAA
CCAAAGTATG ATACTAGTAT TGAATCCAAT GGCAGTTATA TTTCTCCGTT ATCTAAATGT
AATAAAGTAG CTCATATCAT TTATATTACC GATGGTGCAC CTGTACTTGA TGATGCTGCT
AATGACTTGA TTAAAGGACT AGGAGGGACA CCTTATACAT ATAATTCTTC GGGTAAAAGC
AGTTATTTGC CAGCATTAGC AGGGTATATG TTTAATCACG ATATGTCGTC AGCTGATGGT
TTTCAACGAG TAATCACTCA TACGATTGGT TTCAGTTTAG GTGAGGATAA GGATGCCGCA
GAACCTTTAT TAATTGAAAC TGCTAAACGT TCGGTTGATT CCAAAGGTGA GGTTTGGGGG
ACTTATTCCC CAGCTGATAA TACCGTTGAA TTAGTTGCCG CAATTACAAA GTTGGTTGCA
GAAATTAATA AAACAGGGCA GCGATTTTCT GCACCTGGGG TGGCATTCAG TAGTGCAGAC
CCTACACGTA CTCTTGAGTC AGCCTATTAC GCATTATTTG AACCATCACA AAGTCCTAAA
TGGACGGGGA ATTTGAAGAA ATTAAAAGTG AACTCTTCTG GTGTTTTAGT CGACAAAAAT
AACAAAGCTG CAATTGATTC CTCAGGAGGT ATTACTTCGA GTGCTTGCAC CATTTGGAGT
ACATGTAGTA CTGATGGAGA TGTAGGCTAT GTCGACGAGA GTGGGATTAT AGATGGCGGT
AATGTTGTCT CTGCAGGTGG TGCTGCTAGA CAAATTGATC CTAATACTAG AACAATGCTA
AGTGATCTTG ACTCTGGACT TGTTGCTTTA ACGGTTGCAA ATGCTAGTAA ATTTGCAGGC
GGCTCTCGTG AGTTAGCGGC GTTGTTGGGA TTAAATGTCA CAACAACAGA TTCTGATGCC
GCAGTCACTG CAGAATTGGA TAAAGCTTTT GCTTGGATTT ATGGCAAAAA TGTAGATGTT
GCTTCAACCG ATGCGAATGG CAATCCGATC TATACTTCAA TAGGCGTAGG ATTAGGTGGT
ACTCGTAGTG GCAATATTCG CGCAGATATT ATGGGCGACC CTTTGCATTC CCAACCTTTA
GCCATCGATT TTGGTGACCA TACCATGATT TATGTGGGAA CAAATCATGG GGTGATGCAC
GCATTTAATG ACTCTGGGGA TAGTGTCGCT GAGAGTTGGG CATTTATGCC TAATCAGTTA
TTTTCAAATT TAAGTACTAT TCGAAGAAAT GATTATTCCT TTGGTCATTC GGAATATGGC
TTAGATGGCT CACCAGTGTC TTATATTGAA AGGGATGATT CAGCGATTAA GACCGCTTGG
TTGTATTTTG GAATGCGTCG TGGTGGTCAA TCATATTTTG CAATGGATGT AAAAGGAGCG
ACCCCTACAC TGAAATGGAC AATAAGTAAT ACTACTGCAG GCTTTAGTAA TTTAGGTCAA
ACATGGTCAA CTCCAGTCGT TACAAAAGTC CCGATTAATG ATGGAAAACC TGTTTTAATC
TTTGGAGGGG GATATAATCC GGGCTACGAT GCTGCGGGTG GAAAAAATTC ATTTGGTCGA
GACGTTTATA TAGTCGACGC TGATACCGGA ACACTTCTAC ACACTTTTGG AATTGGTGGT
ACTGATACGC CATTACCTAA TATTACAGAT TCTATCGTGG GCTCAATTGC AACATTAGAC
AGTAATGGTG ATGGTATAAC CGATAGATTG TACGCCTCGG ATTTGGGCGG TAATGTTTGG
CGCATGGATA TGCCTGCTTC CGATAAAACC AAATGGAGTG CGTTTATGTT TGCTTCTGCT
GGTGGTGCTT ATGATACATC GGATGATCGT CGATTCTTTT ACGAGCCAAC AGTCGCGCAA
ACCTACTTTA CTGATACTAC AGAAGTCATG GTAACAGACG CTGATGGAAA TACTGAAAAG
GTGATTTCTT ATCAAAATGT ACCCTATGAT GCTGTTACAC TTGGCTCTGG CAATCGTGCA
GATCCACTAG GAACTTCAGT AAACGATAAA TTTTTTGTCA TACAGGATAG GAATGTTGCA
ACGCAGACAT TTGGTAGTGC TACAGGGCAG ACAGCTGTAC CTGATCCAAT TATTTACCCA
GATAATTTAT ATGATGTGAC TCAAGCTGCA CCTTCAACTG AATCTGAAAA AATTGCATTT
AGTGCAAAAC GTGGTTGGTA TTACAGTTTC CCTGGACTTG GAGAGAAAAG TTTATCTCCC
TCAGTTATCA TTAAAGGCAA AGTATATTTT ACCTCATTTA CTCCAACTGG CCCTGCACCA
GATCCTGAAA GCTGCTCTGT CGCATCCGTC GGTAAACTGT ATACATTGGA TTTGCATACA
GGTTTAAGGT TTTCTCAAAA TTATTACATA GATATATGTG ATAATTGCAT TCCTCAACCA
CCTAAGATCA TTACTCCACC TATCGATCCT GAGCATCCAG AGGTTATCCC TGACCCTGTA
TTAATTATTG GTGCGGGAAC TTGTGATGAG AAGGGAGAGA ATTGTACTGG TACAGTTAAT
TTGGATTCAG GCTTAGAAAC GAACAAAATT TATTATCATA TAAATGAGTA A
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| Protein sequence | MKFNQYLFAG FVVALAVPAH TLADDTDIYL NPAQNNIRPQ VLIIFDNSAS MDTMVEGLPG
GYKPNVTYTP LDSANSYQDD MIYFTVGTGL DESGLGIPDS PSETNRFNLK VNACNEATKA
LTDYGRFSGH FGEYSTNGNG KGTWQLVKEN SGNEVQKPID CWEDILATNS SNNNVQFTDT
VSATGYPQNS VVIGSGNNAL YSPWGAKDSA SAANLSGGTL ITLYTANYLR WYRHYQKDVA
SGTTDPNSQQ TRLAIAKDAI SSVISTVPSI DFGLAVYNMN YPREYDRDGG RIVAGIKSRT
AAEKTTLINT ITQLPADTNT PLCETLFEAY SYFSGGKIQF GHSDSNYKDA SNKIDYTANQ
PKYDTSIESN GSYISPLSKC NKVAHIIYIT DGAPVLDDAA NDLIKGLGGT PYTYNSSGKS
SYLPALAGYM FNHDMSSADG FQRVITHTIG FSLGEDKDAA EPLLIETAKR SVDSKGEVWG
TYSPADNTVE LVAAITKLVA EINKTGQRFS APGVAFSSAD PTRTLESAYY ALFEPSQSPK
WTGNLKKLKV NSSGVLVDKN NKAAIDSSGG ITSSACTIWS TCSTDGDVGY VDESGIIDGG
NVVSAGGAAR QIDPNTRTML SDLDSGLVAL TVANASKFAG GSRELAALLG LNVTTTDSDA
AVTAELDKAF AWIYGKNVDV ASTDANGNPI YTSIGVGLGG TRSGNIRADI MGDPLHSQPL
AIDFGDHTMI YVGTNHGVMH AFNDSGDSVA ESWAFMPNQL FSNLSTIRRN DYSFGHSEYG
LDGSPVSYIE RDDSAIKTAW LYFGMRRGGQ SYFAMDVKGA TPTLKWTISN TTAGFSNLGQ
TWSTPVVTKV PINDGKPVLI FGGGYNPGYD AAGGKNSFGR DVYIVDADTG TLLHTFGIGG
TDTPLPNITD SIVGSIATLD SNGDGITDRL YASDLGGNVW RMDMPASDKT KWSAFMFASA
GGAYDTSDDR RFFYEPTVAQ TYFTDTTEVM VTDADGNTEK VISYQNVPYD AVTLGSGNRA
DPLGTSVNDK FFVIQDRNVA TQTFGSATGQ TAVPDPIIYP DNLYDVTQAA PSTESEKIAF
SAKRGWYYSF PGLGEKSLSP SVIIKGKVYF TSFTPTGPAP DPESCSVASV GKLYTLDLHT
GLRFSQNYYI DICDNCIPQP PKIITPPIDP EHPEVIPDPV LIIGAGTCDE KGENCTGTVN
LDSGLETNKI YYHINE
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