Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2990 |
Symbol | |
ID | 4256301 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 3540311 |
End bp | 3542170 |
Gene Length | 1860 bp |
Protein Length | 619 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638123667 |
Product | RNA polymerase, sigma 70 subunit, RpoD |
Protein accession | YP_739031 |
Protein GI | 114048481 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0529376 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATATCTA TGGATCATAC TCCGCAGTCG CAACTCAAGC TGTTGCTTGC CAAAGGTAAA GAGCAAGGTT ACTTAACCTA TGCAGAAGTG AACGATCACT TACCTGCAGA CATGGTCGAT TCTGACCAGA TCGAAGATAT TATCCAGATG ATAAATGACA TGGGTATTCG GGTGTTCGAA GAAGCACCAG ATGCCGATGA CATGATGATG TCGGAAGACA ACACAGACGA AGATGCAGCA GAAGAAGCCG CAGCCGCCCT TGCCACAGTA GAAAGTGAGC TAGGCCGTAC CACAGACCCT GTGCGTATGT ACATGCGCGA AATGGGTACC GTTGAACTGC TGACCCGTGA AGGCGAAATT GTTATCGCCA AACGCATCGA AGAAGGCATC AACACAGTTC AAAGCTCTGT CGCAGAATAC CCACAAGCGA TCGCCATGAT CCTTGAGCAG TACGACCAGT ACGAAGCCGA CGAACTGCGC CTGTCTGATA TTATCTCTGG ATTTGTTAAC CCGGACGAAG AAGACCTAGG CCCAACCGCA ACCCATATCG GCTCTGAATT ATCGGAAGAA GATCTCGATG ATGAAGATGA CGATGAAGAA GATGAAGACG AAGACGGTGA TGGCGACGGC GATGACGATG GCAACAAGGG TCCCGACCCT GAAGAGGCGC GTGAACGCTT TGGCCAATTA AGAACGGCCT ACGAAAATGC CCTTAAAATC ATCGAAGCCA AAGGTCGTGA ACATCCTGAA TCGATCAAAG CACTGTTTGA AATCGGTGAG ATTTTCAAAG AGTTCCGCCT AGTACCCAAG CAGTTCGACC GCTTAGTAAA AAGCATGCGT TCTATGATGG ACCGTGTTCG TGTACAAGAG CGTCTGCTGA TGAAGCTTTG TGTCGAACAG GCCAAAATGC CGAAGAAGAA CTTCGTTAAA TTCTTCACCG GAAACGAAAC CAATTTAGAT TGGTTCGATG CAGAAAAGAA CTCAACCAAG CCTTATGCCG AAGGCTTAAG AATGGTTGAA GAAGACGTAC AGCGTTGCCG TAGCAAGCTG GCCGCCATCG AAGAAGAAAC TGGCTTAGTG ATTGCTGCCA TTAAAGACAT CAACCGTCGT ATGTCAATCG GTGAAGCCAA GGCTCGCCGT GCGAAGAAAG AGATGGTTGA GGCAAACTTA CGTCTGGTAA TTTCTATCGC GAAGAAATAC ACCAACCGTG GTCTGCAATT CTTGGACTTA ATCCAAGAAG GTAACATCGG TTTGATGAAG GCAGTTGATA AGTTCGAATA CCGTCGTGGT TACAAGTTTT CGACCTATGC GACTTGGTGG ATCCGTCAGG CAATCACCCG CTCAATCGCG GACCAAGCCC GTACAATCCG TATTCCAGTA CACATGATCG AAACCATCAA CAAGCTGAAC CGTATCTCTC GCCAAATGCT ACAGGAAATG GGTCGTGAGC CTTCTCCTGA AGAACTGGCA GAGCGTATGA TGATGCCGGA AGATAAGATC CGTAAGGTAC TGAAAATCGC TAAAGAACCT ATCTCCATGG AAACCCCAAT AGGTGACGAT GAAGATTCGC ATTTAGGTGA TTTTATCGAG GATACTACCC TCGAATTACC ACTGGACAGC GCCACTAGCG AAAGCCTGAA GAGCGCGACC CATGAGGTAT TAGCTGGCCT AACAGCCCGT GAAGCGAAAG TACTGCGTAT GCGTTTTGGT ATCGACATGA ATACCGACCA CACGCTGGAA GAAGTGGGTA AACAATTTGA CGTGACCCGT GAACGTATCC GTCAAATTGA GGCGAAAGCC CTGCGTAAAC TACGCCACCC TTCACGCTCG GAAATCTTAA AGTCATTCTT AGACGAATAG
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Protein sequence | MISMDHTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVFE EAPDADDMMM SEDNTDEDAA EEAAAALATV ESELGRTTDP VRMYMREMGT VELLTREGEI VIAKRIEEGI NTVQSSVAEY PQAIAMILEQ YDQYEADELR LSDIISGFVN PDEEDLGPTA THIGSELSEE DLDDEDDDEE DEDEDGDGDG DDDGNKGPDP EEARERFGQL RTAYENALKI IEAKGREHPE SIKALFEIGE IFKEFRLVPK QFDRLVKSMR SMMDRVRVQE RLLMKLCVEQ AKMPKKNFVK FFTGNETNLD WFDAEKNSTK PYAEGLRMVE EDVQRCRSKL AAIEEETGLV IAAIKDINRR MSIGEAKARR AKKEMVEANL RLVISIAKKY TNRGLQFLDL IQEGNIGLMK AVDKFEYRRG YKFSTYATWW IRQAITRSIA DQARTIRIPV HMIETINKLN RISRQMLQEM GREPSPEELA ERMMMPEDKI RKVLKIAKEP ISMETPIGDD EDSHLGDFIE DTTLELPLDS ATSESLKSAT HEVLAGLTAR EAKVLRMRFG IDMNTDHTLE EVGKQFDVTR ERIRQIEAKA LRKLRHPSRS EILKSFLDE
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