Gene Shewmr7_2990 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_2990 
Symbol 
ID4256301 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp3540311 
End bp3542170 
Gene Length1860 bp 
Protein Length619 aa 
Translation table11 
GC content48% 
IMG OID638123667 
ProductRNA polymerase, sigma 70 subunit, RpoD 
Protein accessionYP_739031 
Protein GI114048481 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0529376 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATATCTA TGGATCATAC TCCGCAGTCG CAACTCAAGC TGTTGCTTGC CAAAGGTAAA 
GAGCAAGGTT ACTTAACCTA TGCAGAAGTG AACGATCACT TACCTGCAGA CATGGTCGAT
TCTGACCAGA TCGAAGATAT TATCCAGATG ATAAATGACA TGGGTATTCG GGTGTTCGAA
GAAGCACCAG ATGCCGATGA CATGATGATG TCGGAAGACA ACACAGACGA AGATGCAGCA
GAAGAAGCCG CAGCCGCCCT TGCCACAGTA GAAAGTGAGC TAGGCCGTAC CACAGACCCT
GTGCGTATGT ACATGCGCGA AATGGGTACC GTTGAACTGC TGACCCGTGA AGGCGAAATT
GTTATCGCCA AACGCATCGA AGAAGGCATC AACACAGTTC AAAGCTCTGT CGCAGAATAC
CCACAAGCGA TCGCCATGAT CCTTGAGCAG TACGACCAGT ACGAAGCCGA CGAACTGCGC
CTGTCTGATA TTATCTCTGG ATTTGTTAAC CCGGACGAAG AAGACCTAGG CCCAACCGCA
ACCCATATCG GCTCTGAATT ATCGGAAGAA GATCTCGATG ATGAAGATGA CGATGAAGAA
GATGAAGACG AAGACGGTGA TGGCGACGGC GATGACGATG GCAACAAGGG TCCCGACCCT
GAAGAGGCGC GTGAACGCTT TGGCCAATTA AGAACGGCCT ACGAAAATGC CCTTAAAATC
ATCGAAGCCA AAGGTCGTGA ACATCCTGAA TCGATCAAAG CACTGTTTGA AATCGGTGAG
ATTTTCAAAG AGTTCCGCCT AGTACCCAAG CAGTTCGACC GCTTAGTAAA AAGCATGCGT
TCTATGATGG ACCGTGTTCG TGTACAAGAG CGTCTGCTGA TGAAGCTTTG TGTCGAACAG
GCCAAAATGC CGAAGAAGAA CTTCGTTAAA TTCTTCACCG GAAACGAAAC CAATTTAGAT
TGGTTCGATG CAGAAAAGAA CTCAACCAAG CCTTATGCCG AAGGCTTAAG AATGGTTGAA
GAAGACGTAC AGCGTTGCCG TAGCAAGCTG GCCGCCATCG AAGAAGAAAC TGGCTTAGTG
ATTGCTGCCA TTAAAGACAT CAACCGTCGT ATGTCAATCG GTGAAGCCAA GGCTCGCCGT
GCGAAGAAAG AGATGGTTGA GGCAAACTTA CGTCTGGTAA TTTCTATCGC GAAGAAATAC
ACCAACCGTG GTCTGCAATT CTTGGACTTA ATCCAAGAAG GTAACATCGG TTTGATGAAG
GCAGTTGATA AGTTCGAATA CCGTCGTGGT TACAAGTTTT CGACCTATGC GACTTGGTGG
ATCCGTCAGG CAATCACCCG CTCAATCGCG GACCAAGCCC GTACAATCCG TATTCCAGTA
CACATGATCG AAACCATCAA CAAGCTGAAC CGTATCTCTC GCCAAATGCT ACAGGAAATG
GGTCGTGAGC CTTCTCCTGA AGAACTGGCA GAGCGTATGA TGATGCCGGA AGATAAGATC
CGTAAGGTAC TGAAAATCGC TAAAGAACCT ATCTCCATGG AAACCCCAAT AGGTGACGAT
GAAGATTCGC ATTTAGGTGA TTTTATCGAG GATACTACCC TCGAATTACC ACTGGACAGC
GCCACTAGCG AAAGCCTGAA GAGCGCGACC CATGAGGTAT TAGCTGGCCT AACAGCCCGT
GAAGCGAAAG TACTGCGTAT GCGTTTTGGT ATCGACATGA ATACCGACCA CACGCTGGAA
GAAGTGGGTA AACAATTTGA CGTGACCCGT GAACGTATCC GTCAAATTGA GGCGAAAGCC
CTGCGTAAAC TACGCCACCC TTCACGCTCG GAAATCTTAA AGTCATTCTT AGACGAATAG
 
Protein sequence
MISMDHTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVFE 
EAPDADDMMM SEDNTDEDAA EEAAAALATV ESELGRTTDP VRMYMREMGT VELLTREGEI
VIAKRIEEGI NTVQSSVAEY PQAIAMILEQ YDQYEADELR LSDIISGFVN PDEEDLGPTA
THIGSELSEE DLDDEDDDEE DEDEDGDGDG DDDGNKGPDP EEARERFGQL RTAYENALKI
IEAKGREHPE SIKALFEIGE IFKEFRLVPK QFDRLVKSMR SMMDRVRVQE RLLMKLCVEQ
AKMPKKNFVK FFTGNETNLD WFDAEKNSTK PYAEGLRMVE EDVQRCRSKL AAIEEETGLV
IAAIKDINRR MSIGEAKARR AKKEMVEANL RLVISIAKKY TNRGLQFLDL IQEGNIGLMK
AVDKFEYRRG YKFSTYATWW IRQAITRSIA DQARTIRIPV HMIETINKLN RISRQMLQEM
GREPSPEELA ERMMMPEDKI RKVLKIAKEP ISMETPIGDD EDSHLGDFIE DTTLELPLDS
ATSESLKSAT HEVLAGLTAR EAKVLRMRFG IDMNTDHTLE EVGKQFDVTR ERIRQIEAKA
LRKLRHPSRS EILKSFLDE