Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2989 |
Symbol | |
ID | 4256300 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 3538460 |
End bp | 3540184 |
Gene Length | 1725 bp |
Protein Length | 574 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638123666 |
Product | DNA primase |
Protein accession | YP_739030 |
Protein GI | 114048480 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0358] DNA primase (bacterial type) |
TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00884135 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAATAC CTCGTGATTT TATCAATGAG CTAATCGCTC GCACCGACAT TGTCGAACTT ATCGACCGCA AGGTGCCCTT GAAAAAGGCG GGTAAAAACT ACTCGGCCTG TTGTCCTTTT CATAGCGAAA AATCACCTTC GTTTACCGTT AGCCGCGATA AACAGTTTTA TCATTGTTTT GGCTGCGGTG CCCACGGCAA CGCCATCGAT TTTGTGATGG AGTACGACAG ACTCGATTTT GTCGATGCCA TAGAAGATCT TGCCGGACAA CTGGGCTTAG AAGTCCCAAG GGAACAAGGC ACGGGTAAAC GCCAAGACGA TGGCCTAAGC CGTGATCTAT ACCAATTAAT GGAAGAAGCG AGTCGCTTTT TTCAAACTCA GTTAAGACAA CACCAAGATA AACAAAAAGT CATCGACTAC CTCGCCTATC GCGGATTATC CGATGATATT GTTGAGCATT TTGGGATTGG TTTTGCACCC GACGGTTGGG ATGGCTTATT AAGCCGCTAC CGACACAGTC AAGATGCACA GGATAAACTC CTGACCGCAG GCATGCTGAT CAGCAATGAC AGCGGTAAAA GATACGACAG ATTCCGTGAC CGCCTTATGT TTCCTATTCG CGACCGCCGT GGTCGTGTGA TTGGATTTGG TGGCAGAGTA TTGGGAGATG GCACCCCCAA GTACTTGAAT TCGCCAGAAA CGCCCATATT TCATAAGGGC AATGAACTCT ACGGCCTATA CGAGCTAAAA CAACGTCATC GCGATCCCGA TAAGGTACTG ATTGTCGAAG GCTATATGGA CGTGGTCGCC CTCGCCCAAT ATGGCGTGGA TTACGCGGTT GCCTCACTAG GCACCTCGAC GACGGCCGAA CAATTCCAGT TGTTACTACG TAGTGCCAAG GAAGTGATTT GTTGTTATGA CGGCGATAGA GCCGGTAATG AGGCCGCCTG GCGCGCCTTA GAAACCGCTT TACCCCTACT CAAACCTGGG GACAAAGTGC GTTTTATGTT TTTACCTCAA TCTGAAGATC CGGATTCAAT GGTTCGTAAG ATTGGTAAAG ACGCCTTCGA GCAAATGATG GAAAGTGCCA TCACGCTGCC CGAATTTTTG TTTGATACAT TAGCGACGAA ATTTGGTACC GATAAAGGTA ACTTAGCCAA ACAAGCCTTT GGCCTAATTG AAAAAATTCA AGATACTGTG CTGCAAAACC TGCTACTTGA GAACTTAGCT CACAAGTTAG GCATGAACAG CTCAGACGAT ATGAAGAAAA AACTGGGTTT TAGTGTCAAA CAAACTAAGC CCACAGCATC AACAGGACTC AAAGGACGCG GTACACCATT GCGACTTGCC ATCGCCTTGT TAGTGCAGCA TCCCGAGCTG GGAGTGGGAT TATCCCCACA ACCGGCATTA AACCATCTGC AAATGCCAGG CATCGACTTG CTGCCATTGC TGTTGGAATT AACACGAGAG CATAGGTTAA ACAGCGCACA ACTACTTGAG CAATTCAGAG ACAGCCCCCA CAGCGGGACG CTGCATAAAT TAGCCCAATG GGACCATCAA GTGGCGGATG AAAACCTGCT CGAAAAGTTT AAACAGACCC TGGTTTGGTT GAACAATCAA TATATTGAAC AACGATATCA GGAATTGAGT CTAAAACAGA CCCATACTAA GGAAGAGAAG ATCCAGCTGC AGAAGCTGAT CTCAGTCATG AAAGGACTAA ACTGA
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Protein sequence | MAIPRDFINE LIARTDIVEL IDRKVPLKKA GKNYSACCPF HSEKSPSFTV SRDKQFYHCF GCGAHGNAID FVMEYDRLDF VDAIEDLAGQ LGLEVPREQG TGKRQDDGLS RDLYQLMEEA SRFFQTQLRQ HQDKQKVIDY LAYRGLSDDI VEHFGIGFAP DGWDGLLSRY RHSQDAQDKL LTAGMLISND SGKRYDRFRD RLMFPIRDRR GRVIGFGGRV LGDGTPKYLN SPETPIFHKG NELYGLYELK QRHRDPDKVL IVEGYMDVVA LAQYGVDYAV ASLGTSTTAE QFQLLLRSAK EVICCYDGDR AGNEAAWRAL ETALPLLKPG DKVRFMFLPQ SEDPDSMVRK IGKDAFEQMM ESAITLPEFL FDTLATKFGT DKGNLAKQAF GLIEKIQDTV LQNLLLENLA HKLGMNSSDD MKKKLGFSVK QTKPTASTGL KGRGTPLRLA IALLVQHPEL GVGLSPQPAL NHLQMPGIDL LPLLLELTRE HRLNSAQLLE QFRDSPHSGT LHKLAQWDHQ VADENLLEKF KQTLVWLNNQ YIEQRYQELS LKQTHTKEEK IQLQKLISVM KGLN
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