Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2978 |
Symbol | |
ID | 4255655 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 3528614 |
End bp | 3530302 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638123655 |
Product | peptidoglycan binding domain-containing protein |
Protein accession | YP_739019 |
Protein GI | 114048469 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.111666 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0445873 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTACAAGG CCTTTTATGG ACTCAGTGAT AACCCTTTTT CGATTGCACC CAATCCTCAT TATTTATTCT TGAGTGACAG ACACAGAGAA GCCTTAGCTC ATCTGACCTA TGGACTAGGT GAGACTGGGG GATTTGTGTT ATTGACGGGG GAGGTTGGTA CGGGTAAAAC GACAGTATCT CGTTGTTTAC TTGGGCAATT GCCCGACCAT ACCGACACGG CATTTATTTT AAATCCTTCG CTGACTGAGT TGGAACTCCT CGCCACACTC TGTGATGAAT TGAAGATTAG CTATGGTGAA AACCCAACCC TTAAACAGTT AACCGATCAT CTAAGCCGTT TTTTGCTGGC CAATCATGAG AAAGGCCGCA ATACCGTACT CATTATCGAT GAGGCGCAGC ATCTGCGTGC CGAAGTATTA GAGCAATTAA GGCTGCTGAC GAACCTTGAG ACCGACACCA AAAAACTGCT GCAGGTGATC TTAATTGGCC AGCCTGAGTT GCAATTGCTA CTTAAACGTC AAGAGCTGCG ACAATTAGCC CAGCGGATCA CCGCGCGTTA TCATCTACTG CCACTCAATG AAGATGAAAT AGCGCTCTAT GTGTTGCACC GTTTACAGGT TGCAGGTCGT TTCGAACCGC TATTTACCCG CAAAGCAATT AAAGTGCTGC ACAAATACAG TGGCGGCATT CCGCGGTTAA TTAACTTGTT GTGTGAGCGT GCGCTGATGG CGGGTTACGC ACAATCTAAG GTACCAATCG ATCACCATAT GGTGAGACAA GCGGCGGCCG AAGTATTAGG CGAAGAAGAA CCACAGCAAA ATAAACTCTT GTGGCCGAGC GCTATTGCGG CGGCATTAGT TGTGGCTTTC GGCGTGTCTT ATTGGCTATT TACCGAAAGC CCTGCGGTTG CCAATGTGGC CAACTCGCCT GTGACACAAG TGAGCCAAAC GACACCTGCA GTGACTCAAG CAGCGACTCC AAATAACAGT ATTCAGCCGG AGCAAACACT GGCTGCGACC CAGAGTTCGC CAGTGGCTAG TGAGCCGCAA ACGCTTGCGG CGCCGGATCC GAGTGTGCGG GTGTTGCAGG AGGCCATCAA ACAAAGTCGC AGTATTGATA CTGCCTTTGC AGGCCTCTTT AATGTATGGG GCAAGGTCCC CTTTAAAGGC TTAACTGCAT GTCAGTCGGC GCTGGAGCAG GGGCTTTCCT GCTATCAGCA GCAGGGCAAT TGGATGTCGC TCACAAGGCT CAATTATCCC GCGGTTGTGT ATTTAGTGGA TGATAACCAA CAAGATTTTT ATGGTGCTGT GATTGCTGTC GATGGTGAGC AGCTATTAAT GCAGTTGGGC GAGCAGCAGC TTTGGGTCGA TAGAGCCTGG TTCAATCAAC ACTTTAGCGG CACCTTTGAA ATTCTCTGGC AGGCACCTAA TTTGCCTATG CTGGAAATCA GCCATAAGTC GAGTCCAGGA CAATTACAAT GGCTTGAAAA TGCCCTTGCT CATGTGGCTA ACCGACCTTC GCGCCGGGTG TCTCAATTCG ATCTGAAATT AGAGAACGAT CTTAAAGCCT TCCAAAGCCA GCATGGTTTA AAGGCCGATG GTATTGCAGG TAATCAAACC TTAGTGAGAC TGAATTTGTA TTTAAGCGAT CAGGGACCGC GCCTCACCGA TAATGGAGCG CAGAGTTAA
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Protein sequence | MYKAFYGLSD NPFSIAPNPH YLFLSDRHRE ALAHLTYGLG ETGGFVLLTG EVGTGKTTVS RCLLGQLPDH TDTAFILNPS LTELELLATL CDELKISYGE NPTLKQLTDH LSRFLLANHE KGRNTVLIID EAQHLRAEVL EQLRLLTNLE TDTKKLLQVI LIGQPELQLL LKRQELRQLA QRITARYHLL PLNEDEIALY VLHRLQVAGR FEPLFTRKAI KVLHKYSGGI PRLINLLCER ALMAGYAQSK VPIDHHMVRQ AAAEVLGEEE PQQNKLLWPS AIAAALVVAF GVSYWLFTES PAVANVANSP VTQVSQTTPA VTQAATPNNS IQPEQTLAAT QSSPVASEPQ TLAAPDPSVR VLQEAIKQSR SIDTAFAGLF NVWGKVPFKG LTACQSALEQ GLSCYQQQGN WMSLTRLNYP AVVYLVDDNQ QDFYGAVIAV DGEQLLMQLG EQQLWVDRAW FNQHFSGTFE ILWQAPNLPM LEISHKSSPG QLQWLENALA HVANRPSRRV SQFDLKLEND LKAFQSQHGL KADGIAGNQT LVRLNLYLSD QGPRLTDNGA QS
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