Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2968 |
Symbol | |
ID | 4255645 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 3518042 |
End bp | 3518737 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 638123645 |
Product | aquaporin Z |
Protein accession | YP_739009 |
Protein GI | 114048459 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
TIGRFAM ID | [TIGR00861] MIP family channel proteins |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0762473 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000412314 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAATATGT CACAAAAAAT GGCGGCAGAA TTTTTGGGCA CTCTGTGGCT CGTTCTTGGC GGCTGCGGCA GCGCCGTTCT GGCGGCGGCC TTTCCAGAAG TTGGGATAGG CTTACTTGGG GTGGCGTTAG CCTTTGGTTT AACGGTTCTG ACGATGGCGT TTGCCATTGG TCATATTTCA GGTTGCCACT TAAACCCCGC CGTATCCTTT GGACTCTGGG CTGGCGGGCG TTTTCCGGCA TCGGAACTGC TACCTTATAT CATTGCCCAA GTGGCGGGTG GTATTGTCGG TGCAGGCGTA TTGTACGCCA TCGCTTCAGG GCAAGAAGGT TTTAGTCTCG CGGCGGGCTT TGCTTCTAAC GGCTTTGGCG AACATTCGCC CGGCGGTTAC AGCATGATGT CGGTGTTGAT CTGCGAAATC GTGATGACCT TGTTCTTTTT ATTGGTGATT TTAGGGGCGA CCGACGAGCG AGCACCTAAA GGCTTTGCGC CTATTGCGAT TGGTCTGTGT TTAACTCTTA TCCACTTGAT CAGCATTCCC GTGTCAAACA CCTCGGTCAA TCCGGCCCGC AGTACAGGCC CTGCGCTGTT TGTCGGCGAT TGGGCCGTAT CGCAACTGTG GATTTTTTGG GTCGCTCCTA TCCTTGGTGC CATTCTCGCC GGCGTGATTT ACCGTTATTT CAACGCTGCT AAGTAA
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Protein sequence | MNMSQKMAAE FLGTLWLVLG GCGSAVLAAA FPEVGIGLLG VALAFGLTVL TMAFAIGHIS GCHLNPAVSF GLWAGGRFPA SELLPYIIAQ VAGGIVGAGV LYAIASGQEG FSLAAGFASN GFGEHSPGGY SMMSVLICEI VMTLFFLLVI LGATDERAPK GFAPIAIGLC LTLIHLISIP VSNTSVNPAR STGPALFVGD WAVSQLWIFW VAPILGAILA GVIYRYFNAA K
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