| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2888 |
|---|
| Symbol | |
|---|
| ID | 4255722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 3424941 |
|---|
| End bp | 3427547 |
|---|
| Gene Length | 2607 bp |
|---|
| Protein Length | 868 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638123565 |
|---|
| Product | glycosyl hydrolase family chitinase |
|---|
| Protein accession | YP_738929 |
|---|
| Protein GI | 114048379 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3325] Chitinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAGA CTCAAATCTC CACCACTGCG ATGCTGGTGG CTTCGGTACT GGCATCCGTC
GCCAGTTTTC AAGCATTTGC CGCGCTCCCA GGAAAACCTA CCTTAGGTTG GGGAGAAACC
AAGTTTGCTA TTATCGAGGT GAATCAAGCC GCCTCAGCCT ATAACCAGTT AGTGACGGTT
AAGGATGCTG CCGACGTGTC GGTAAATTGG AACCTGAATA ATGGCGATAT TGGCAACAAA
GCCCAAGTGT TGCTCGATGG CAATCTGGTT TGGGAAGGAC CCGCCAGCGC CAATGGGGTC
GCTAATTTTA AGGTGAACAA GGGCGGCCGT TATCAAATGC AAGTGCAATT GTGTAACAGT
GACGGTTGTA CGGCGAGTGA TGCTAAACAA ATCCTCGTGG CAGATACTGA TGGTAGTCAC
TTAGCGCCAC TGAATGCGCC TTTAAAAGAG AACAACCGCC CTTACGCCAA TAAATCCGGC
AAAGTAGTCG GGGGTTATTT TGTGGAGTGG GGAGTTTATG GCCGTAAGTT CCCCGTCGAT
ATGGTGCCAG CACAAAACTT AACCCACATT TTATATGGCT TTACTCCTAT ATGTGGCGGC
AATGGCATCA ACGACAGCCT AAAAGAAATC GAAGGCAGCT TTGAGGCATT GCAACGTGCC
TGTGCTGGCC GTGCCGATTT TAAAGTTGCA ATTCATGACC CTTGGGCTGC GATTCAAAAA
CCGCAGGCGG GTGTGAGTGA TTATTCCGAC CCTTACAAAG GCAACTTCGG CCAATTGATG
GCGTTAAAAC AAGCCTATCC CGATCTGAAA ATCCTCCCCT CCGTTGGTGG TTGGACGCTC
TCGGATCCCT TCTACTTTTT AGGGGATAAA ACCAAGCGTG ACACCTTTGT GGCCTCGGTG
AAGGAGTTTT TACAAACTTG GAAATTCTTT GATGGTGTTG ATATCGACTG GGAGTATCCA
GGTGGTGGCG GGGCAAACCT TAATTTGGGT AATGCGAATG ACGGAGAAAC CTATGTGCTT
CTGATGCGTG AGTTACGTGC CATGCTGGAT GAGCTAAGTG CTGAGACTGG CCGAACCTAT
GAGTTAACGT CTGCAATTGG TATCGATGAC AAAAAAATGC AAAAGGTTGA TTATCAGGCT
GCGCAGCAGT ACATGGATTA CATCTTCCTG ATGAGCTACG ACTTTAGCGG AGCATTTACT
TACACAGGTC TTGCCAATCA AACGAATCTT TACCCTTCTA GTTGGGATCC TAATACACGT
TTTAGTGTTG ATAAAGGGAT CAAAACCCTT TTAGGTCAGG GCGTTACTCC GGGTAAAATT
GTGGTAGGCG CAGCCATGTA TGGCCGCGGC TGGACAGGTG TTAATGGCTA TACAGACGGA
AATCCTTTTA CTGGCACGGC TACAGGGCCT GTTAAAGGCA CTTGGGAAAA TGGCGTCGTC
GATTACCGTC AGATAGTAAA CGAATATATG GGGAATGGTT GGACTTACCT ATACGATGAA
GTTGCCGAAG CGCCTGCTGT TTTTAAAGCT GCAACAGGTG ACTTAATTAC CTTCGACGAT
GCTCGTTCTG TTAAAGCCAA GGGCCAATAC GTGCTGGCCA ATCAGCTCGG TGGTCTGTTC
GCCTGGGAAA TTGATGCCGA TAATGGTGAC ATTCTCAATG CCATGCACGA AGGTCTAGGT
CATGGAGAGG GCACAACGCC ACCAGCGAAT AAAGCGCCGA TTGCCAATGC GGGGACGGAT
GTCACCGTAA CGGGCACGTT GGATGTGACG CTAAACGGCA GCGCGTCGCG GGATCCTGAA
AACGCAGCTT TAAGTTATCA ATGGAGTCAA GTCTCGGGCC CAAGCTTGAG TATCACTAAT
GCGGATATGG CCAATGCTGT GGTGCAGCTG AGCGCGACGG CGTCGGAGGT GGTGTATGTG
TTTAGTCTTC GAGTTACCGA TCCTGAAGGC TTATCCTCAA CCGATACTGT GACTATTACC
CATAAGGCCG AGACAGCAAA CCAAGCGCCT GTGGTGAGTG CGCCAGCGAG TGTGACGGTT
GAAGCGGGGC AATCAGTCAG TATCAACGCG ACGGCGACCG ACGCCGATGG CGACAGTCTT
ACCTACGCAT GGACAGTGCC AAGCGGCGTG GCGGCGAGTG GACAAAACAG TGCCACACTG
GTGGTGACGG CGCCAGCTGT TACTCAATCT ACCCAATACA GTTTGAGTGT ATTAGTCTCC
GATGGCGCCT TAGATGCTAG TGCCGCATTG ACTTTAACCG TGACGCCTAA GGCAACGGGT
GGTCAATGTG ATGCCACTGA CCCTAATGCG GCCAATTATC CGGCGTGGAA TACGACAAGC
ATTTACAACA CGGGTGATAC AGTGAGTTAT AACCAGCTGG TTTGGAAGGC GAAATACTGG
ACTCAAGGTG ACACACCTTC AAGAACGGCT GACCAATGGC AATTGTTGAG TCAGGTCGAG
CTGGGTTGGG ATGCGGGTGT TGCCTACAGC GGTGGTGCAA CTACTAACTA CAACGGTCGT
CAGTGGCAGG CCAAATACTG GACTAAGGGA GATGTTCCCG GTGTCGCGTC CGTTTGGACT
GATATTGGTG CAGCAACGTG CCCGTAA
|
|---|
| Protein sequence | MFKTQISTTA MLVASVLASV ASFQAFAALP GKPTLGWGET KFAIIEVNQA ASAYNQLVTV
KDAADVSVNW NLNNGDIGNK AQVLLDGNLV WEGPASANGV ANFKVNKGGR YQMQVQLCNS
DGCTASDAKQ ILVADTDGSH LAPLNAPLKE NNRPYANKSG KVVGGYFVEW GVYGRKFPVD
MVPAQNLTHI LYGFTPICGG NGINDSLKEI EGSFEALQRA CAGRADFKVA IHDPWAAIQK
PQAGVSDYSD PYKGNFGQLM ALKQAYPDLK ILPSVGGWTL SDPFYFLGDK TKRDTFVASV
KEFLQTWKFF DGVDIDWEYP GGGGANLNLG NANDGETYVL LMRELRAMLD ELSAETGRTY
ELTSAIGIDD KKMQKVDYQA AQQYMDYIFL MSYDFSGAFT YTGLANQTNL YPSSWDPNTR
FSVDKGIKTL LGQGVTPGKI VVGAAMYGRG WTGVNGYTDG NPFTGTATGP VKGTWENGVV
DYRQIVNEYM GNGWTYLYDE VAEAPAVFKA ATGDLITFDD ARSVKAKGQY VLANQLGGLF
AWEIDADNGD ILNAMHEGLG HGEGTTPPAN KAPIANAGTD VTVTGTLDVT LNGSASRDPE
NAALSYQWSQ VSGPSLSITN ADMANAVVQL SATASEVVYV FSLRVTDPEG LSSTDTVTIT
HKAETANQAP VVSAPASVTV EAGQSVSINA TATDADGDSL TYAWTVPSGV AASGQNSATL
VVTAPAVTQS TQYSLSVLVS DGALDASAAL TLTVTPKATG GQCDATDPNA ANYPAWNTTS
IYNTGDTVSY NQLVWKAKYW TQGDTPSRTA DQWQLLSQVE LGWDAGVAYS GGATTNYNGR
QWQAKYWTKG DVPGVASVWT DIGAATCP
|
|---|
| |