| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2804 |
|---|
| Symbol | |
|---|
| ID | 4255885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 3319484 |
|---|
| End bp | 3321352 |
|---|
| Gene Length | 1869 bp |
|---|
| Protein Length | 622 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638123482 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_738846 |
|---|
| Protein GI | 114048296 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0291177 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.873498 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTGG ACATTTCACA GTTTCCCGTG TTGGCTCAGG CCAACACTCC TAATGAACTC
CGCCAGCTTC CTCAGGCCCT GTTACCTCAA TTGGCCGATG AGTTGCGGGA GTTTCTTCTT
AAGTCCGTTG GCATGTCCAG CGGACATTTT GCCTCTGGAC TCGGCACAGT CGAACTGACT
GTTGCCCTGC ATTATGTCTA TAACACCCCG TTTGATCGTT TGATTTGGGA CGTTGGCCAC
CAAGCCTACC CCCATAAAAT TCTCACCGGT CGCCGCGACA GAATGCACAC CATTAGGCAA
AAGAACGGTT TACACCCTTT CCCTTGGCGG GAAGAAAGTG AATACGACAC CTTTAGCGTC
GGACACTCTG GCACATCCAT CAGTGCCGCA TTAGCCATGG CCGTTGCCGC CGAAAAAGAA
CAGGCTGGAC GCAAAGTGGT CGCCGTCATT GGCGATGGCG CCATGACGGG CGGTATGGTG
TTCGAGGCCA TGAATCACGC GGGTGATTTG CACAACGATA TGCTGATGGT GCTGAACGAT
AACGAAATGT CGATTTCAGA AAACGTCGGC GCGCTCAACA ATCACTTAGC GCAGTTGATG
TCGGGCCGCC TCTACACCAC GATTCGTGAA AGCAGTAAGA AAGTGCTCAA GGGCATGCCG
GTCATCAAAG AGATGGCCAA GCGCACCGAA GAACACCTTA AAGGCATGGT TGTACCTGGC
ACTCTGTTTG AAGAGTTAGG CTTTAACTAT ATCGGCCCTA TCGATGGCCA CGATGTCGAT
GCCTTAGTGG AAACCCTGCG TAATATGCGC TCTCTAAAGG GACCACAAGT GCTGCACATA
ATGACCAAAA AAGGTCGTGG TTATGAACCG GCCGAAAAAG ATCCTATCGG TTGGCACGCA
GTACCTAAAT TTGACCCGTC ACAGTTTAAG AAGCCAGCCA CTAAGCCGGG ACTGCCAACC
TTCTCACAAG TATTTGGCAA ATGGTTATGT GATATTGCCG AGCAGGACGA AAAAGTCTTA
GGCATTACCC CTGCCATGCG TGAAGGTTCG GGCATGGTGG AGTTTTCCCA GCGCTTCCCG
AAACAATATT TCGATGCCGC TATTGCCGAG CAACATGCGG TGACTTTAGG TGCCGGATTT
GCCTGTGAAG GCTTTAAGCC TGTGGTCGCC ATTTACTCGA CCTTCCTGCA ACGGGGTTAT
GATCAACTGA TCCACGATGT GGCACTACAG CGTTTGCCTG TATTGTTCGC CATTGACCGT
GGCGGTATTG TCGGTGCCGA CGGCCCAACC CACCAAGGGG CATTCGATTT AAGCTTTATG
CGCTGCATCC CGAATATGGT AATCATGGCG CCATCGGATG AAAATGAATG TCGCCAAATG
CTCTATACCG GTTATTGCTA TGATGCAGGT CCGAGCGCGG TGCGTTATCC AAGGGGCAGC
GCCACCGGCG CGACTCAGGT AGAAGCCATG ACGGCATTGC CGATAGGTAA AGGCGTGATT
AAGCGTTTAG GTAAACGTAT CGCCATGCTG AACTTTGGTA CCACCTTAGC CGCCGCCTTA
ACCGCCGCAG AAAGCTTAGA CGCCACCGTC GTCGATATGC GCTTTGTGAA GCCATTAGAT
GTGGATTTAG TTAAAGAGAT GGCGCAAACC CACGATGTGC TCGTGACAGT GGAAGAAAAC
GCCATTATGG GCGGCGCAGG CTCTGGCGTT TTAGAACTGC TGCAAAAGCT TAAAATGCCC
AAACCTGTGC TGCAAATCGG CCTACCCGAT GAGTTTATTA AACATGGCTC TCCAGAAGAA
GTGACCCATG ATTTACAACT CGATGCCGAA GGTATGTTAG CGCAAATTAA TGCTTTTCTT
GCCGATTGA
|
|---|
| Protein sequence | MSLDISQFPV LAQANTPNEL RQLPQALLPQ LADELREFLL KSVGMSSGHF ASGLGTVELT
VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDRMHTIRQ KNGLHPFPWR EESEYDTFSV
GHSGTSISAA LAMAVAAEKE QAGRKVVAVI GDGAMTGGMV FEAMNHAGDL HNDMLMVLND
NEMSISENVG ALNNHLAQLM SGRLYTTIRE SSKKVLKGMP VIKEMAKRTE EHLKGMVVPG
TLFEELGFNY IGPIDGHDVD ALVETLRNMR SLKGPQVLHI MTKKGRGYEP AEKDPIGWHA
VPKFDPSQFK KPATKPGLPT FSQVFGKWLC DIAEQDEKVL GITPAMREGS GMVEFSQRFP
KQYFDAAIAE QHAVTLGAGF ACEGFKPVVA IYSTFLQRGY DQLIHDVALQ RLPVLFAIDR
GGIVGADGPT HQGAFDLSFM RCIPNMVIMA PSDENECRQM LYTGYCYDAG PSAVRYPRGS
ATGATQVEAM TALPIGKGVI KRLGKRIAML NFGTTLAAAL TAAESLDATV VDMRFVKPLD
VDLVKEMAQT HDVLVTVEEN AIMGGAGSGV LELLQKLKMP KPVLQIGLPD EFIKHGSPEE
VTHDLQLDAE GMLAQINAFL AD
|
|---|
| |