| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2791 |
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| Symbol | |
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| ID | 4258406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 3308393 |
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| End bp | 3309403 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638123469 |
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| Product | isocitrate dehydrogenase |
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| Protein accession | YP_738833 |
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| Protein GI | 114048283 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000299358 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0670544 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAAAA GAACGATAAC CGTAATTCCA GGTGATGGAA TTGGCCCAAG TATTATTGAT
TCAGCCTTAA AAATTCTTGA TAAAGCAGGT TGTGATTTTG AATATGAATT TGCCGATGCC
GGCTTAACCG CTCTCGAGAA GCAAGGCGAA CTACTTCCGC AGCGTACTTT AGAACTGATC
GAAAAAAACC GCATCACCCT GAAAGGCCCG CTGACTACAC CAGTAGGCGA AGGCTTTACC
TCTATCAACG TAACATTGCG TAAGAAATTC GGCCTGTACG CTAACGTGCG TCCAGTGTTG
TCTTTCAAAG GCACTCAAGC CCGTTATGAA AACATTGATA TCATCACAGT GCGTGAAAAC
ACCGAAGGCA TGTACTCAGG CCACGGTCAA AAAGTTTCTG AAGACGGCAC CACAGCTGAA
GCGACCAGTA TCGTCACTCG CCAAGGCGCT GAGCAAATCG CGACATTCGC CTACGAACTG
GCTCGTAAAG AAAACCGCAA AAAAGTCACT ATCGTGCACA AAGCAAACAT CATGAAGTCA
ACTTCAGGTC TGTTCCTGAA AGTGGCCCGT GAAGTGAGCC AACGCTACCC AGACATCAAA
ACCGAAGAAA TGATCGTCGA TGCGACTTGC ATGAAGCTAG TGATGAACCC AGAAAACTTC
GACGTTATCG TGACCACCAA CCTGTTCGGT GACATTCTGT CGGATCTGTG TGCTGGTTTA
GTCGGTGGTT TAGGTATGGC ACCCGGCGCC AACATTGGCC GTGATGCAGC GATTTTCGAA
GCGGTTCATG GCAGCGCGCC AGATATCGCT GGTAAAAACC TCGCAAACCC AACCTCTGTG
ATCTTAGCCT CTATCCAAAT GCTGGAATAC TTAGGCATGG CTGATAAAGC CGACATGATC
CGTAAAGCCG TATCGGCAGT GATTGAAGAA GGCGACCGTA CGACTCGCGA TTTAGGCGGC
ACCCACGGCA CGACTGACTT CACTCAAGCG GTGCTTGACC GTCTGTCATA A
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| Protein sequence | MSKRTITVIP GDGIGPSIID SALKILDKAG CDFEYEFADA GLTALEKQGE LLPQRTLELI
EKNRITLKGP LTTPVGEGFT SINVTLRKKF GLYANVRPVL SFKGTQARYE NIDIITVREN
TEGMYSGHGQ KVSEDGTTAE ATSIVTRQGA EQIATFAYEL ARKENRKKVT IVHKANIMKS
TSGLFLKVAR EVSQRYPDIK TEEMIVDATC MKLVMNPENF DVIVTTNLFG DILSDLCAGL
VGGLGMAPGA NIGRDAAIFE AVHGSAPDIA GKNLANPTSV ILASIQMLEY LGMADKADMI
RKAVSAVIEE GDRTTRDLGG THGTTDFTQA VLDRLS
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