| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2717 |
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| Symbol | |
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| ID | 4258436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 3214485 |
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| End bp | 3215339 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638123395 |
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| Product | tRNA pseudouridine synthase C |
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| Protein accession | YP_738759 |
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| Protein GI | 114048209 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTAG ATGATGATTG GCTGGATATG CCAGAGGATA AATACAACCC AAGCGAGAGC
GACGAGCAGT CAGAGCCTGC GCCAGAGCTG CGTGTTTTGT ATCAAGATGA GCACTTGGTG
GCTATCCACA AACCTGCGGG ATTATTGGTT CATCGCAGCT ACTTAGCACG GCGTGAGCGC
TTTTTTGCGA TGCAACTGAC TCGTGACTTG GTTGGTTGCC ATGTGTTTCC GGTACACCGT
TTAGATAGAC CCACCTCGGG AGTGTTATTA TTTGCCAAAA GCAGTGAGGT GGCCAACGCC
CTTTGCGAGC AATTTGCTAA CCACAGTATT GAAAAACAAT ATTTGGCACT GGTGCGTGGC
AATATGCACG AGAGTGGCAT TTTGGATTAT GCGCTTAAAG TCGAATTGGA TGAGGTGGCT
GACAAGTTTG CCAATCAAGA TAAAGCCGCG CAGGATGCAG TGACTCAATA TGAGCCGCTA
TTAAATACCG AAATTCCTTA TCCGTCGGGG CGTTATGCAA CTAGCCGCTT CGCGTTAGTG
AAACTGAGTC CCAAAACGGG GCGTAAGCAC CAACTTAGAC GCCATATGGC GCATTTACGT
CATCCTATTA TTGGCGATAC CACTCACGGC GATGGGAAAC AAAATGCGTT TTTCCGTGCG
CATTTCGATA TCAATCGATT GTGGCTGATT GCGAAGAAGT TAACCTTCAC TCACCCGGTG
ACACTTGAGC GCTTAAGTAT TGAAACCGAG CTTGAGCCAG AATGGGAAAC CGTGTTTGCA
GGACTGGGCT GGGACGATGC CACGCTTTGT CGAGAGCCAA GTGTGTTGAT TGCGGAGCAA
ACGACGACCG TTTAA
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| Protein sequence | MNLDDDWLDM PEDKYNPSES DEQSEPAPEL RVLYQDEHLV AIHKPAGLLV HRSYLARRER
FFAMQLTRDL VGCHVFPVHR LDRPTSGVLL FAKSSEVANA LCEQFANHSI EKQYLALVRG
NMHESGILDY ALKVELDEVA DKFANQDKAA QDAVTQYEPL LNTEIPYPSG RYATSRFALV
KLSPKTGRKH QLRRHMAHLR HPIIGDTTHG DGKQNAFFRA HFDINRLWLI AKKLTFTHPV
TLERLSIETE LEPEWETVFA GLGWDDATLC REPSVLIAEQ TTTV
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