| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2687 |
|---|
| Symbol | |
|---|
| ID | 4256048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 3174655 |
|---|
| End bp | 3177903 |
|---|
| Gene Length | 3249 bp |
|---|
| Protein Length | 1082 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638123365 |
|---|
| Product | SNF2-related protein |
|---|
| Protein accession | YP_738729 |
|---|
| Protein GI | 114048179 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.846523 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000081012 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGCT TGTCCCCCCA AGAGCCAATC CAATTGACTC AAACGGCTAT TGAGTCCTTA
TTCACGCCGC CGACACTGAT GCGCGCCCGT GATTATGTGA TGCAGGGGAG GGTGTTAAGC
GCGAAAGCCA ATGCCGATTT TCGCCATATC GAAGGCACAG TCACGGGCAC GGAAACCACG
CCCTATCGTC AGGATATTCG TCTCGTCAGT GTCAATCATA AGCTAGTGAT GAACGGCTTT
TGTTCCTGCC CAGCCAGCGG CAACTGCAAG CATATGGCCG CGGTGCTCTA CAGTCTGCTT
ACGGATAAGA CCGTTGAGGA CCAACGTATC GCCCAGTGGT TACACCTACT CGATGAAGCC
GATGATCCCA ATGTGAATGA TGTCGAATCC CTTTACGATG ACAGGGTGCT GTATATCCTT
TCAAAGGACG ATAACGGGGT GTTTATCGAA CTTAGGCGCG GTAAGCTTGG CAAGAAGGGC
GGTTACAACA AGGGCACTAA GATTGCGCTC TCGGACGTGC AATATTATAT GCCCGCTTGG
ATTGGCGCCG AGGATGTGCT GATCTTAAAT CTTATCATGT CGACCAGACG CCACGGCGCA
TCGCGCCTGT ATCTTAAGGC GCAGTTAGGG GCGGTAGCGA TTGAGAAAAT GCTCGCCACC
GAGCGCTGCT TCTGGGAGGA GAGCCGCCTC GCATTAACCG CGGGCGAGGC CATTACACCG
CAATTTCTCT GGCAAGATAT CGACAGCGAG CACAAGCAAA TGCGCCTAGT CTTGCCCGAG
CGGGATAACT GGGAACTCGT GCCGACAGAG CCGCCTTACT ATATCGAACT GGATTATTTT
CACATCGGCG CTATAGATAC CGACATTAGC GTCGATAAGC TGCGGCTACT CAGCCAAATG
CCGCCCGTGC CGAGCACTCA GGTTGAACTG GTGAGCCATA GACTGATCAA GCATTTTTCG
GCGCGCACTG TGCCGCCGCC AAGTGCGATC GATTTTGTCG AGCTGAGAGA TAAGTTACAG
CTTCGTTTAA CGCTTAAGGT TGTCCCCGCA GGCACAATGC CACCTGGCAG CGCTCTGTCA
TCTGCAACGG AGACCAGCAT CGCCCAGCCG TATCTGGCGC TGGAGTTTGT CTACGGGGAT
CTCGTCTTAA GTGGCAATGC TGCCAAAGAA GCATTAACCC TAGTGACTCA AGGCGGCACC
ACCTATCAAA TTAACCGCGC GCTTGAAGAA GAGCAGCAAG CCGTGTCAAA GCTGCAAACC
CTTGGCTTTA GCCGCTTTTC CTTGGAGGGC GCTGCAAATG GGGCTTCCCT TTGGAGCTTA
GGTCACTTGC CCGATGCGAT TAGGGAATGG CTAGCGTTTA TCGATGAAGA AGTCCCAAGA
TTACAAACTC AAGGTATAGA GGTGCGATTG GCCCCAGAGT TTAGCCTTAA AGTAGTCGAT
ACGCCGTTAA CGGTTGAGCT GGATGACAGC CAAGAGGGCT GGTTCTCCCT GTCGTTGCAT
GCCGATATCA ATGGTCAACG CTTACCAATG TTGCCGCTGG TGGCAACTTG GTTAAAACAA
CATGGCGAGC CGGCCGATGA TGCCGAGTTA TTGCTACCCA GCCCCTCTGG CGAATGGCTT
AAAATTAAAG CCAGTGTTAT CAAACCTTTA ATGAGCATTA TTCAAGAGTT GTTTGAGCAG
CATCGTGGCC ACAGTATCGC CATACCTAAG TACCGTGCGC ATTTACTCAA TGAGTTAGCC
GAAAGCGAGA TTAGCCTGCT CAATGGTGAA AGGGTGCGTC AGCTCGCGAC AAAGTTAGCC
GAATTTAATG GTGTGGTTGC GGTCAGTGCG CCGACAGGAC TGAATGCACA GCTGCGGGCT
TATCAGCAGC AAGGCCTAAA TTGGCTTTGT TTTTTAAAGG AATATCAACT CGGCGGCATC
TTAGCCGACG ACATGGGGCT TGGGAAAACC ATTCAAACCT TGGCATTTCT GTTAAAGCAG
CAGGAGGCTA AATTAGCTGG GCAGCCAAGA TTGCCGAGCC TGATTATTTG CCCAACCAGT
TTAGTGGGGA ACTGGGCGAA GGAGGCGGCC AAGTTTGCGC CGTCGTTAAG TTTGGCGGTG
ATCCATGGCG CCCAGCGTGG GCCGCTGTTA TCGCGATTAA GCGAGTTTGA TGTCGTCGTC
ACAACTTATC CCCTTATGGT GCGGGATTAC GATTATTACC AGACTCAGCC GTTTGAGCAT
ATAGTGCTCG ATGAGGCGCA GCAGATTAAA AACGCCCAAG CCAAAGTGAG CCAGCAAATT
AAGGCGTTGC AAGCGCCGTT TAGACTCTGC CTTACCGGCA CCCCCCTTGA GAATCATTTA
GGTGAACTCA AGTCATTGAT GGATTTTTGT TTACCGGGAC TCTTGGGAAC AACCGCCTAT
TTTAATAAGG CGTTTCGCTA TCGGATTGAG CGTTATGGCG ATGGCGAGCA GGCGAAGGTG
TTGAGTCAAC GTATCGCCCC CTTTGTGTTA AGGCGCACCA AGGCCGAGGT AGTGACTGAG
CTGCCACCTA AAACCGAGAT CTACCAAACC CTAGAGCTTG AGAAAGATCA GCGTAATCTA
TACGAAAGTA TTCGCCTGAG TATGGAGAAA AAAATTCGAG AATTATTTGC AAGCCAAGGC
GTGGCGGGCA GCCATATCGA GTTTTTAGAT GCCTTGCTCA AATTGCGCCA AGCCTGCTGC
GATCCGCGAT TAGTCAAACT CGAGCAAGCA CAAAAGGTAA AAAATAATGC CAAGCTAAAC
TGGCTGAGCC AAAACCTGCC GGAAATGGTG CAGGAAGGTC GCAAGATTTT AATCTTCAGC
CAATTTACCA GTATGTTGAT ATTAATTGAG GAATTGCTGC AATCCCTCGA CATCGACTAC
AGCAAACTGA CGGGGCAAAC ACGGTTGCGT CAGGGGCAAA TTGATAAGTT CCAAGAAGGC
GATACGCCGG TGTTTTTAAT CAGCTTAAAG GCGGGGGGCA CTGGGCTTAA TCTCACCGCG
GCGGATACGG TTATCCACTA CGATCCTTGG TGGAATCCGG CGGCAGAAAA GCAAGCGACG
GACAGGGCGC ACCGCATTGG CCAAGAAAAT CCAGTGTTCG TCTACAAGCT GATTGCCGAA
GGCACGGTAG AAGAGAAAAT CCAAGAAATG CAGCAGCATA AGCAAGGTTT AGCAGATAGT
ATTCTCGAAG GAAAAGGCAA AGGCGCGTGG CAGGGCAGTG CCGATGAATT GCTCTCGCTA
TTCCACTAG
|
|---|
| Protein sequence | MNRLSPQEPI QLTQTAIESL FTPPTLMRAR DYVMQGRVLS AKANADFRHI EGTVTGTETT
PYRQDIRLVS VNHKLVMNGF CSCPASGNCK HMAAVLYSLL TDKTVEDQRI AQWLHLLDEA
DDPNVNDVES LYDDRVLYIL SKDDNGVFIE LRRGKLGKKG GYNKGTKIAL SDVQYYMPAW
IGAEDVLILN LIMSTRRHGA SRLYLKAQLG AVAIEKMLAT ERCFWEESRL ALTAGEAITP
QFLWQDIDSE HKQMRLVLPE RDNWELVPTE PPYYIELDYF HIGAIDTDIS VDKLRLLSQM
PPVPSTQVEL VSHRLIKHFS ARTVPPPSAI DFVELRDKLQ LRLTLKVVPA GTMPPGSALS
SATETSIAQP YLALEFVYGD LVLSGNAAKE ALTLVTQGGT TYQINRALEE EQQAVSKLQT
LGFSRFSLEG AANGASLWSL GHLPDAIREW LAFIDEEVPR LQTQGIEVRL APEFSLKVVD
TPLTVELDDS QEGWFSLSLH ADINGQRLPM LPLVATWLKQ HGEPADDAEL LLPSPSGEWL
KIKASVIKPL MSIIQELFEQ HRGHSIAIPK YRAHLLNELA ESEISLLNGE RVRQLATKLA
EFNGVVAVSA PTGLNAQLRA YQQQGLNWLC FLKEYQLGGI LADDMGLGKT IQTLAFLLKQ
QEAKLAGQPR LPSLIICPTS LVGNWAKEAA KFAPSLSLAV IHGAQRGPLL SRLSEFDVVV
TTYPLMVRDY DYYQTQPFEH IVLDEAQQIK NAQAKVSQQI KALQAPFRLC LTGTPLENHL
GELKSLMDFC LPGLLGTTAY FNKAFRYRIE RYGDGEQAKV LSQRIAPFVL RRTKAEVVTE
LPPKTEIYQT LELEKDQRNL YESIRLSMEK KIRELFASQG VAGSHIEFLD ALLKLRQACC
DPRLVKLEQA QKVKNNAKLN WLSQNLPEMV QEGRKILIFS QFTSMLILIE ELLQSLDIDY
SKLTGQTRLR QGQIDKFQEG DTPVFLISLK AGGTGLNLTA ADTVIHYDPW WNPAAEKQAT
DRAHRIGQEN PVFVYKLIAE GTVEEKIQEM QQHKQGLADS ILEGKGKGAW QGSADELLSL
FH
|
|---|
| |