| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2604 |
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| Symbol | |
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| ID | 4257486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 3078143 |
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| End bp | 3080998 |
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| Gene Length | 2856 bp |
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| Protein Length | 951 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638123282 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_738646 |
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| Protein GI | 114048096 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.315963 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCT TAACCACCAA GCCTGCCGCG ATTGCCCTAG CCATCGCAGC GGCTCTGACA
GCAACTCACA GCGCTGCCAA TGAAATACCA GCAGAGCAAC AAACCGAAAC GAAAGAGCAA
GTTCAACCGA AGGACACTGC GCAAACCCAG GATGCTGAAG TCGAACGCAT TCAGGTAACA
GGGATCAGAA ATAGTATTAA GGAAGGGATG TTCCTAAAGC AGAATGCCGT GAGCGTAGTC
GACCTTGTGG TCGCCGATGA CATTGGTAAA TTTCCAGATG AAAACTTAGC CGAGGCGCTA
CAGCGCATTC CTGGGGTGAC CATTACCCGT AACGGCGGCG AAGGACAAAA TATTCTGGTT
CGCGGCCTTG GCGATGGTTA TAACGTCACC ACCCTCAATG GCCGTAAATT GGCCTCAGAA
AATGCAGGCC GAGACTTTAA CTTCGACACC ATCGCCTCGG AGCTGGTAAA CGTGCTGGCG
GTGTATAAAT CACCCGAAGC CAGACTGACC GAAGGTGGCA TTGGCGCTAT CGTCGATATC
CAAACCCGTA AACCGCTGGA TTTAGAAGGC CGTACCATTC AAGCCTCCGC CAAGGGGATT
TACGAGTCCC GTACCGAGGA TATTCACCCC CACGCCTCGC TGATCATCGG CGATAAGACG
GATGACGATA GTTTTGGTGC GCTGGTCTCG GCAGTATATT CCCGTAAAAC CCTACGGGCT
GACACCTATT CGGCCGAAGG TTTCTTCGAT GAGGATGAAG GTTGGGGCGT CGACAGCGCC
GGGGTGCCGG TCGATACCAA CAATAACGGC AAGATCGACC CAGGTGAGAT TTATGCCTCT
AAGATCCCAA GCTATATGTA TTTTGCGAAC GCCCAAGACG TGCGTGAACG CGTAGGTGGC
ACGCTCGCAC TGCAATGGCG CCCACTAGAT AATCTCGACA TTAACTTCGA CGGTCTCTAT
TCACGCTACA ACACCGATGG CCATAAATAC CAAATCGGCT TCGTGAACTA CGACGAAGAA
TGGACGCCGG GCACACCGCT ATTTACCGAC GCCATATTTG ACGATCAGGG CCGAGTGGTG
AGCATGAACC AAACGGGTGA CAACACTATG GTTGAATTGC TCAACCTCAG TACCCCAAGA
AAAACCGATA CCTACCAAAT GGGTCTGAAG GCCGACTGGT ATGTTATGCC CAACTGGTCG
ATTAGCGCCG ATGTTGCCTA CTCCGCCGCG CAAAATGCCA ATAATGGCGA TAACCGCTTC
GTGGTTGCCC GTGGCTTTGT CGATGGTATC GACATCGATT ACACCCGTGG CAATATGCTG
CCCGATGTGG TGATTAGCCC AGGTCTGAGT GCCGATCAAA AATACGGCGC CCACTACAGC
CGTAACAGTG GCGTCGATGT GGACGATAAA ATTACCGACA TCAAACTGAA CAGCCAATAC
ATTCCCGATG AAGGCATCAT CAGCAAGGTC GATTTTGGCG TCAATTATGT CAAGCAAGTG
AAAAAGCAGA CCGAATTTGC CTCATCCAAT TCCAGCCAAT TTAGCCGTGG TGGTTATTAC
CTTACCCGCG ATGGTTATAC CTTCGATAAC AGCACTGTCT TCACTCAGGG CGAATTTGAA
CTGTTCCAAA TTCCTTCGAG CGTATTTGTG CCCGCCAACT TCGATAACTT CCTCGATGGT
GAAAACAGCA TCTCCCCAGA GCCTTGGCCA AGCTTCGACT ACGACAAACT GCTTGAATAC
TACCGCAGCA TTAACCAAGA AGCGGCGGAT AAGAGCATTG TCGCTAGCCT CAATAAGGCT
GGCAGCTATG AAGTCACCGA AGCTGTGACC TCCGCCTATG TGCAGGTGAA TATTGAAGAG
GAAATTTTCG ATCTGCCTTA TATGTTGAAC TTAGGCCTCA GAGCTAGCCA AACCAAAGTC
ACCTCCGACG GTTATGCCTA CGATTTGGCT AAGGTTGAGT TAGACAGTGC CGGCCAACCC
ACCAACAATG ATTGGAAAAA CGTTGTTCAA ACCAGTTACG ACGATAGCTA TACCAATGTG
TTACCGAGCA TGAACTTTAA GCTCAATCTG CAGGATGATT TGCTGCTACG TGTCTCCGCC
GCTGAAGTGT TAAGCCGCCC ATCACTCTAT GCGCTGCGAG TGTGGGCTGC ACCGAGTTTC
ACGACCCGTG AGAATGGCTT ACCGACACTG ACACGCGGTA ACCCAAGCGT CGCCCCCGAA
AAGGCGCGCC AAGGGGATAT CTCCCTCGAA TGGTATTTCC ACGAGAGTAG CTCACTGAGC
GGTGCCATTT TTATCAAGGA CATTGAATCC TTTATCACCG ACGACAAAGG GCCTCAAATG
GTTGAGGGGA CAGAATATTA TGTTACTCAA CCCGTATCGG GTAAGTACGG TGCCAAAGTA
CAAGGGGTGG AGGCCGCATG GCAACAATCC CTCGACGAAT ACCTGCCAGA ACCCTTTAAT
GGTTTAGGTT TCCAGCTGAA CTACACATAT GTCGACAGCA GCTACGATGA TCCCGAAATC
GATGCGAAAG GCTTACCCTT CAAGGGCATG TCGAAAAACT CTTACAACGC CGTCCTTTAC
TATGAGCAAT ATGGTCTGCA AGCTAGGGTT GCCTATAACT GGCGCAGTAA GTTTTTGGTC
GATCCCGAAG CTTGGGGTGG TCCAGCTTGG ATCCAAGATT ACGGCCAGCT CGATGCTAGC
GCGAGTTATG ATATTTTTGA AAATGTGTCG ATTTTCGCCG AGGCTTCTAA CCTGACCAAT
AACCGCTATT CGGGTTATGT GAAGTATGAA GACCAAGTGA ATTACCTAGA GCGTTTTGGC
ACCCAAATCG CCCTCGGGAT CCGCGGCAGT TTCTAA
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| Protein sequence | MKLLTTKPAA IALAIAAALT ATHSAANEIP AEQQTETKEQ VQPKDTAQTQ DAEVERIQVT
GIRNSIKEGM FLKQNAVSVV DLVVADDIGK FPDENLAEAL QRIPGVTITR NGGEGQNILV
RGLGDGYNVT TLNGRKLASE NAGRDFNFDT IASELVNVLA VYKSPEARLT EGGIGAIVDI
QTRKPLDLEG RTIQASAKGI YESRTEDIHP HASLIIGDKT DDDSFGALVS AVYSRKTLRA
DTYSAEGFFD EDEGWGVDSA GVPVDTNNNG KIDPGEIYAS KIPSYMYFAN AQDVRERVGG
TLALQWRPLD NLDINFDGLY SRYNTDGHKY QIGFVNYDEE WTPGTPLFTD AIFDDQGRVV
SMNQTGDNTM VELLNLSTPR KTDTYQMGLK ADWYVMPNWS ISADVAYSAA QNANNGDNRF
VVARGFVDGI DIDYTRGNML PDVVISPGLS ADQKYGAHYS RNSGVDVDDK ITDIKLNSQY
IPDEGIISKV DFGVNYVKQV KKQTEFASSN SSQFSRGGYY LTRDGYTFDN STVFTQGEFE
LFQIPSSVFV PANFDNFLDG ENSISPEPWP SFDYDKLLEY YRSINQEAAD KSIVASLNKA
GSYEVTEAVT SAYVQVNIEE EIFDLPYMLN LGLRASQTKV TSDGYAYDLA KVELDSAGQP
TNNDWKNVVQ TSYDDSYTNV LPSMNFKLNL QDDLLLRVSA AEVLSRPSLY ALRVWAAPSF
TTRENGLPTL TRGNPSVAPE KARQGDISLE WYFHESSSLS GAIFIKDIES FITDDKGPQM
VEGTEYYVTQ PVSGKYGAKV QGVEAAWQQS LDEYLPEPFN GLGFQLNYTY VDSSYDDPEI
DAKGLPFKGM SKNSYNAVLY YEQYGLQARV AYNWRSKFLV DPEAWGGPAW IQDYGQLDAS
ASYDIFENVS IFAEASNLTN NRYSGYVKYE DQVNYLERFG TQIALGIRGS F
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