| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2588 |
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| Symbol | |
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| ID | 4256670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 3061519 |
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| End bp | 3063168 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638123266 |
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| Product | pyridoxal-dependent decarboxylase |
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| Protein accession | YP_738630 |
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| Protein GI | 114048080 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAAA AACTCCCTCG CCAAGCCATC GCATCCGAAG ACAGTTTGAT GCGAATTTTC
ACTGTGCCCG AAGATGCGGA ATCCACCTTA AGCATTATCG AGCAGAAGCT TTCCGAGGAC
TTAGCCGGTT TTTTGGGTGA CAGCATTGCC GCGCTAGAAA AGCCGCTCTC CGAAATCGAG
ACCGATTTTC AAGCCTTTGA AATTCCAAGC CAGCCGCGTT TTGTCTCCGA CTACACCGAC
GAAATCATGC AGAATCTCGT CGCGCATTCG GTGCATACGG CGGCGCCCAG TTTTATCGGC
CATATGACCT CGGCACTGCC CTATTTCGTG TTACCACTGT CGAAAATGAT GGTGGGGCTG
AATCAAAACT TGGTCAAAAT CGAAACCTCC AAAGCCTTTA CGCCGCTTGA GCGCCAAGTG
CTCGGCATGA TGCACCATTT GATTTACGCT CAACACGATG ATTTTTATCG TAATTGGATG
CACAGTGCCA ACCATTCCCT TGGCGCATTT TGCTCAGGCG GCACTGTGGC TAACATCACC
GCCCTGTGGA TTGCCCGCAA CCAATTACTC AAGGCCGATG GCGACTTTAA AGGCGTGACC
CGCGAAGGCT TAATCAAGGC GCTGCGTCAC TATGGCTTCG ATGATTTAGC GATTCTGGTC
TCCGAGCGCG GCCACTACTC CTTAGGTAAG GCCGTCGATC TGCTCGGTAT TGGTCGCGAC
AATATCATCA GCATCCCAAC CGATGGCAAT AACAAAGTTG ACGTTGCCAA AATGCGCGAA
GTCGCCGCCG AACTGGCGAA TAAACGCATC AAAATCATGG CGATTGTTGG GGTGGCTGGC
ACCACCGAGA CGGGCAATAT CGACCCACTG CGCGAACTTG CCGCCTTAGC AAGTGAGCTA
AACTGCCACT TCCATGTGGA TGCGGCTTGG GGCGGCGCAA GCTTATTATC CAATAAATAC
CGTCACTTAC TCGATGGTAT TGAACTCGCA GATTCAGTCA CCATCGATGC TCATAAGCAA
ATGTATGTCC CTATGGGCGC GGGCATGGTG CTATTTAAAA ATCCTGAGTT TGCCCATGCC
ATTGCCCACC ACGCCGAATA TATTCTGCGC CGAGGCTCTA AGGATTTAGG CAGCCAAACG
CTCGAAGGCT CACGCCCCGG CATGGCGATG TTAGTGCATG CCTGTTTGCA GATTATCGGC
CGCGATGGTT ATGAAATCCT TATCAATAAC AGCCTTGAAA AAGCCCGTTA TTTTGCCGAG
CAAATCGACG CACACCCTGA CTTTGAGCTA GTCACCGCGC CAGAGCTGTG CCTGCTCACC
TATCGTTATG TTCCTGCGAA TGTGCAGGCA GCGATGCAAC TGGCGATAGA ACAAGGCTAT
AAGACCAAAC TCGCTCGCTT TAATGAGCTG CTCGATGGTC TAACCCAATT TATTCAAAAA
CACCAACGCG AACAGGGTAA ATCCTTTGTC TCCCGCACCC GCATTCAACC CGCGCGCTAC
TTTAGACAAC CCACAGTGGT GTTTCGCGTG GTATTAGCTA ATCCTTTGAC TAGCCATGAG
ATCCTTAATC AAGTGCTTAT CGAGCAAGGC GAAATTGCCG CATTGGATAA AGAGTTCTTA
CCTGCGCTAT TAGCTATGGT CAATGAATAG
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| Protein sequence | MTQKLPRQAI ASEDSLMRIF TVPEDAESTL SIIEQKLSED LAGFLGDSIA ALEKPLSEIE
TDFQAFEIPS QPRFVSDYTD EIMQNLVAHS VHTAAPSFIG HMTSALPYFV LPLSKMMVGL
NQNLVKIETS KAFTPLERQV LGMMHHLIYA QHDDFYRNWM HSANHSLGAF CSGGTVANIT
ALWIARNQLL KADGDFKGVT REGLIKALRH YGFDDLAILV SERGHYSLGK AVDLLGIGRD
NIISIPTDGN NKVDVAKMRE VAAELANKRI KIMAIVGVAG TTETGNIDPL RELAALASEL
NCHFHVDAAW GGASLLSNKY RHLLDGIELA DSVTIDAHKQ MYVPMGAGMV LFKNPEFAHA
IAHHAEYILR RGSKDLGSQT LEGSRPGMAM LVHACLQIIG RDGYEILINN SLEKARYFAE
QIDAHPDFEL VTAPELCLLT YRYVPANVQA AMQLAIEQGY KTKLARFNEL LDGLTQFIQK
HQREQGKSFV SRTRIQPARY FRQPTVVFRV VLANPLTSHE ILNQVLIEQG EIAALDKEFL
PALLAMVNE
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