Gene Shewmr7_2552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_2552 
Symbol 
ID4257451 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp3012431 
End bp3014056 
Gene Length1626 bp 
Protein Length541 aa 
Translation table11 
GC content49% 
IMG OID638123227 
Productextracellular solute-binding protein 
Protein accessionYP_738594 
Protein GI114048044 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0329561 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGTGC TAATAAGACG CCTGTGCCTA TCAACTGCAG TTTTCTGCAT GAGTGGGTTG 
TTGGTTGCAT GTGGCCCCCA ACGACTCCCT TCCGGTTTGG TCTATTGTTC CGAAGGGAAT
CCCGAGTCTT TTAATCCGCA GTTGGTGACC TCTGGCACCA CCATCGACGC CACCTCACAC
CAAATTTATA GCCGCTTAGT GGACTATGAT GCGATTTCAG GCCAGCTCGT GCCTGCGCTG
GCCACCAGTT GGGCCGAGAG TGACGATGGT TTAAGTTACC GTTTTACCCT CAGGGAAAAT
GTTAAGTTTC AACATTCATC CCGTTTTACA CCAAGCCGCG ACTTTAACGC CGACGATGTG
CTGTTTTCCT TCAATCGGAT TATCGATAAG CACCACCCTT ACCATGGCGT ATCACGTACC
GGTTATCCTT TTTTCCAAAG TATTGGATTT TCAGAACAAG TTAAAAGTGT TGAGAAAATC
AATGACCATG AGGTCATCTT TCGTTTAGCA CGCAAAGATG CGTCGTTTTT ATCAAATCTA
GCGACAGACT TTGCCGTCAT CCTCTCTAGC GAATATGCCG ATCAGCTACT TGCGCAGGGA
CACCCTGAAA ATCTTGATCA TTTCGCCATA GGTACAGGGC CTTTTACCTT AGTGCATTAC
GCCAAAAACG AATATGTTCG CTATCGCCGC AATCCCGACT TTTGGGGAGA GCCCGCCAAG
GTCGAGATGC TGATCTACGA TATCACCCCT AAAAGCACTG TGAGACTGGC CAAACTAATC
GCTGGTGACT GCAGCGTATC GGCCCTGCCC AAAGCGGGAG AACTGCCCGT TATCAAGCAA
CATGAACAGC TCAGTATTGA GTCACAACCT GGTCTCAACG TCGCCTTTTG GGCCTTCAAC
ACACAAAAGC CTCCTTTAGA TGATGTACGC GTTCGCCGCG CCCTCGCCTA TGCCGTAGAT
AAGCAAAATA TCTTACGTGC CGTGTATCAA AACACCGCCA TAGAAGCCAC AGGTGTGTTG
CCGCCAGCGT CTTGGGCCTA CGACAGCAAT AAAAAACTAT TAGATTACAA TCCGCAAAAA
GCGCGCGATC TGTTAAAAGA AGCGGGAATA AAACATCTCA GCATTGATAT CTGGGCCATG
CCTGTCGCCC GCGCCTACAA CCCTAATGCA CTGAAAACTG CCGAATTAAT TCAATCAGAC
TTAGCCAATA TTGGCGTAAA AGTGAATATC ATCAGCTACG ACTGGAGCGT TTTTAGCCAA
AGATTGAGCC GTGATGAATA TGACTCTGTG CTCATTGGCT GGAACGCCGA TAACAGCGAC
CCGGATAACT TCTTCACTCC ATTACTCAGC TGCTCGGCGA TGCAATCAAA CAACAACCGT
TCTCGCTGGT GCAATAAAGA GTTTGATGCC ATTCTAGACA GAGCAAGGGA AGTCTCGACT
CAAGCCGAAC GTAAAGCGAT TTACCAAGAG GCCGAAGCCT TCTTAGCCGA ACAAGTGCCA
ATGTTAAGTT TGGCCCATGC TAAACGTGTC GCCCTAACCC GCAGCAACAT CCACGATATG
CAACTGACAC CTTTTGGCGG CATCTCCTTT TCCCATACCA GTCAAGCTGA GCAGGAGACA
CACTGA
 
Protein sequence
MSVLIRRLCL STAVFCMSGL LVACGPQRLP SGLVYCSEGN PESFNPQLVT SGTTIDATSH 
QIYSRLVDYD AISGQLVPAL ATSWAESDDG LSYRFTLREN VKFQHSSRFT PSRDFNADDV
LFSFNRIIDK HHPYHGVSRT GYPFFQSIGF SEQVKSVEKI NDHEVIFRLA RKDASFLSNL
ATDFAVILSS EYADQLLAQG HPENLDHFAI GTGPFTLVHY AKNEYVRYRR NPDFWGEPAK
VEMLIYDITP KSTVRLAKLI AGDCSVSALP KAGELPVIKQ HEQLSIESQP GLNVAFWAFN
TQKPPLDDVR VRRALAYAVD KQNILRAVYQ NTAIEATGVL PPASWAYDSN KKLLDYNPQK
ARDLLKEAGI KHLSIDIWAM PVARAYNPNA LKTAELIQSD LANIGVKVNI ISYDWSVFSQ
RLSRDEYDSV LIGWNADNSD PDNFFTPLLS CSAMQSNNNR SRWCNKEFDA ILDRAREVST
QAERKAIYQE AEAFLAEQVP MLSLAHAKRV ALTRSNIHDM QLTPFGGISF SHTSQAEQET
H