| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2493 |
|---|
| Symbol | |
|---|
| ID | 4257200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2949913 |
|---|
| End bp | 2952234 |
|---|
| Gene Length | 2322 bp |
|---|
| Protein Length | 773 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638123168 |
|---|
| Product | DNA internalization-related competence protein ComEC/Rec2 |
|---|
| Protein accession | YP_738535 |
|---|
| Protein GI | 114047985 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) |
|---|
| TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein
[TIGR00361] DNA internalization-related competence protein ComEC/Rec2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.105792 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.137051 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGGAT TCATTTTTGG CTTTAGTGCC ACCTTATTAT CAGCGATGTT GTGGCCTTCG
CTGCTGCCAA TCAGTTGTTT ACCCTACCTT TGCCTTGGGG CGCTCATCTT ATTCAAAAAA
GCACCTAGTT TGTCAGGCGT GCTCTTTGCG ATGTGTTGGC TTACTGGGTT TTGCTTAGTC
TTATCTCGCC AGGAGCTTCC TTTATCGCAA CAGCCTATTC ACGTGAGGGG CGAAATCATA
TCACTTGTTA GTCAAAACAG CGACTGGGTT AGCTTCGATA TTATTGTCGA TAAACCAAAT
TTAATCTTTG TGCCAAGGGC GAAATTGCGT TTGACCTGGC AATCCTCGGA GACGCTGCAA
GTTGGGCAAG TGTGGTCTTT TACCCTGATG CCTAAAAGTA TCTCGAGCGT GTTGAATCAA
GGTGGTTACA ATGAACAAAA GCAATTGATT AGCCAACATA TTGTCGGCAA GGGGCGGGTG
CTACACGCCA AGCTGCAAAC ATCACATTTC TCATTAAGAA ATCATCTCAT CGAGCAGTTA
GCTCCCAAGC TGTCGATGTT AGCGCAGGGT GATATTTTGC TGGCACTTAT TTTGGGGGAT
AAGCAACTTA TATCAGCGAG CAAGTGGCAG GACTTGAGGC AAACGGGAAC AGGGCATTTA
GTGGCGATAT CGGGACTACA TTTATCGGTG ATCACCGCTT GGGTGTATTC CTGTATTTTG
TTTTTACTCA CTCGAGTGGC GGCGCATCCT AGCAGGCGTA ATTTAGTGAT TGCCCTATTG
CTCGCCGGAG CAAGCGCCTT TTTTTATAGC TACTTAGCGG GATTTGCCGT CTCGACGCAA
CGTGCACTAG TGATGATTTT ATTGATCATG CTACTAAGTC TATTAAGGCG TTACTCGAGT
GCTTGGGACC GTTTGTTGTT TGCACTCTTT ATTGTGCTTT TAGTCGATCC ACTTGCCTGT
TTGAGTGCTG GGTTCTGGCT GTCGTTTTGT GCTCTAGCGA TTATTTTATA TACCTTAGAA
AGCGCGCCAG TCGCCCAATC TATTGAAAAT AAGGCCACTT TTATGGTTAG GGCGAGAATA
AGATTCGCGC AATTTTGGTC GATTCAATGG CGTTTAAGTC TGGTATTAGG ATTGGTTCAG
GCTATCTTTT TCGGCGGCCT GAGTGTGCAT AGTCTCTGGA TGAATATGCT GGTGGTGCCT
TGGTTTAGTC TTATCGTTAT TCCACTGTCG ATGCTGGCTC TTATCATCTG GTGGATAGGC
ACGCTTTTCG GGAAATCATG GTTCGGATTC TTTAATCTGG CAGATTTAAC CCTATTACCC
TATGGCAAGT TACTCGAACT CAGCGGCGAT TTGCCCGCCC ATTGGTATGC TGTTTCCGAA
ACATTATTAG CGGGCAGCCT GTGTGCACTC TTGTCGATGA TATTGTGGCG CTATCTTCCG
CATCATCGTC AATATAGGTT ATGGCATTTA CCAATCGCCT TGCTGTTTAT TCCCCTTATA
TTATTAATTT TACAGCGTAT TACAGAACCC TCTTCGCCTA AATGGACACT GCATCTACTC
GATGTGGGGC AGGGATTAGC GGTAGTGATT GAACAGGAGA ACCGGGCACT TATCTATGAT
ACGGGCGCCG CCTATGGTGA GGGTTTTAGC TATAGCGAAC GGGTGATTAT CCCGTTTCTT
AATCGTAAAG GGTTGGCTCT GGTGGATTAT ATTGTCGTGA GCCATGGCGA TAACGACCAT
GCCGGCGGCG CAAAGGTATT GGCCAAAGCC TATCCCAGCG CAAACTGGAT AACTGATGTG
GCTCACTTAG GTGGTGCGCC TTGTTTGCCG CAGCAAATTC AGTGGCTGCA ATTAAAGCTA
AGCTTTATTT CCCCACCGAC GGCTACAGGT GGAAATAACG CCTCCTGTGT GCTGCGTATC
GATGATGGCG TGAACAGCCT GTTACTCAGC GGGGATATAG AGAAGGAAAC CGAAGCCCTA
TTGATAGCAC AATCACTTAT AGGTACTGAG CTCAAAAGCA AAGTGTTAAT TGCGCCGCAC
CATGGTAGCC GAACCTCATC AACGCCTGCT TTTATTGATG CCGTCGCTCC TGAATTAGTA
CTGTTTCCCG CAGGCTTGAA CAATCGCTAT GGCTTCCCAA AGCCTGATGT GGTTGCACGC
TATCAGGCGC GGCAGATAAG CTATTTAACG ACAGGGCTTG AAGGCCAAAT TAGTGTCAAC
TTTACAAATG GGCGGTTGGA GGTGAAAACC TATCGGCGTG ATTTAGCGCC ATTTTGGTAT
AACCGCTTGT TTAGATTTGG TGACTTGATT AATCCAGAGT AG
|
|---|
| Protein sequence | MNGFIFGFSA TLLSAMLWPS LLPISCLPYL CLGALILFKK APSLSGVLFA MCWLTGFCLV
LSRQELPLSQ QPIHVRGEII SLVSQNSDWV SFDIIVDKPN LIFVPRAKLR LTWQSSETLQ
VGQVWSFTLM PKSISSVLNQ GGYNEQKQLI SQHIVGKGRV LHAKLQTSHF SLRNHLIEQL
APKLSMLAQG DILLALILGD KQLISASKWQ DLRQTGTGHL VAISGLHLSV ITAWVYSCIL
FLLTRVAAHP SRRNLVIALL LAGASAFFYS YLAGFAVSTQ RALVMILLIM LLSLLRRYSS
AWDRLLFALF IVLLVDPLAC LSAGFWLSFC ALAIILYTLE SAPVAQSIEN KATFMVRARI
RFAQFWSIQW RLSLVLGLVQ AIFFGGLSVH SLWMNMLVVP WFSLIVIPLS MLALIIWWIG
TLFGKSWFGF FNLADLTLLP YGKLLELSGD LPAHWYAVSE TLLAGSLCAL LSMILWRYLP
HHRQYRLWHL PIALLFIPLI LLILQRITEP SSPKWTLHLL DVGQGLAVVI EQENRALIYD
TGAAYGEGFS YSERVIIPFL NRKGLALVDY IVVSHGDNDH AGGAKVLAKA YPSANWITDV
AHLGGAPCLP QQIQWLQLKL SFISPPTATG GNNASCVLRI DDGVNSLLLS GDIEKETEAL
LIAQSLIGTE LKSKVLIAPH HGSRTSSTPA FIDAVAPELV LFPAGLNNRY GFPKPDVVAR
YQARQISYLT TGLEGQISVN FTNGRLEVKT YRRDLAPFWY NRLFRFGDLI NPE
|
|---|
| |