Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2440 |
Symbol | tolB |
ID | 4255766 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 2890415 |
End bp | 2891743 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638123115 |
Product | translocation protein TolB |
Protein accession | YP_738482 |
Protein GI | 114047932 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000137237 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.263362 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATTT TGGCAAAATG GTTAGCATTA GCGGTTCTGC TTTGCACTAT GCCGGCAAAA GCGGCGCTGG ATATTGTGAT CACTGAGGGT GTGGATGCGG CGCGTCCAAT CGCAGTGATG CCATTCCAAT GGCAAGGTGC GGGTGCGCCA CCTCAGGCGA TCGCCGATGT GGTAATGTCT GACTTAATTC GCAGCGGTAC CTTTAAACCA TTAGATGAAT TAGGGTTACC ACAACGCGGT ATCGGTGCCT TAGCCCAGTT TGACGCGAGT GCGTGGGCCA ATGTGGGTGC CGAAGCCGTT GTTGTGGGAT CGGTAAAACC CTACGGTACA GATCAGTTTT TGGTGAGCTT TGACCTTATC GATTTGGTTA AAGCGCAAAA CCAAGCGTTA AAAGGGCCTA CCAGTGCGAC TGAATTTTTG ATGGACAGTC GCCAAACGGT GATTTCTGCG GCGCAGTTCC GTCAATATGG CCACCGTATC AGCGATATTG TCTATGAGAA GCTGACGGGT ATTCGTGGTG CTTTCTTAAC CCGTATTTCC TACGTGGTGG TTAACCACAG CCAGAAAGCG GCTTATTCAC TGATGATCGC CGACTATGAC GGTTACAACG AGCAGATGTT ACTGCGCTCT CCTGAGCCGC TGATGTCTCC CTCATGGTCA CCCGATGGCC GTCGTTTGGC CTATGTGAGC TTTGAAAACA AAAAGGCTGA GATTTTTGTT CAGGATCTTT ACACCCAAGT ACGTACTAAG GTGAGTAGCT TCCCTGGCAT TAACGGTGCA CCGACATTCT CGCCCGATGG TAAATCCTTG GCCGTGACTC TCTCAAAGGA TGGTCAACCT GAGATTTACG TTATCGATAT CGCCACTAAG GCAGCAAAAC GTATTACCAA CCACTATTCC ATCGATACTG AGCCTTCTTG GTATCCCGAT GGCAAGTCAT TGTTGTTTAC CTCCGAGCGC GGTGGTAGAC CACAGTTATA TCGTGTAGAT TTAAATTCAG GCAAAGTGAC TCGTGAAACC TTTGAAGGTG AATGGAATTT AGGTGGTTCA ATTACCCCTG ATGGTCGCAG CATGATTTTC GTGAATCGCA CAAACGGTAA ATTTAATATT GCACGTATGG ATTTAAGTAC GCGCTTTATG CAGGTGCTGA CATCGACACG TTTGGATGAA TCTCCAAGTG TGGCCCCTAA TGGTACTATG GTGATTTATG GCACTACGTA TCAAGGCAAG CAAGTTTTAG CAGCTGTTTC TACGGACGGA CGCTTTAAAG CGAGATTACC GGTGGGTCAG GGCGAGGTGA AATCACCTTC TTGGTCTCCG TTTCTCTAA
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Protein sequence | MKILAKWLAL AVLLCTMPAK AALDIVITEG VDAARPIAVM PFQWQGAGAP PQAIADVVMS DLIRSGTFKP LDELGLPQRG IGALAQFDAS AWANVGAEAV VVGSVKPYGT DQFLVSFDLI DLVKAQNQAL KGPTSATEFL MDSRQTVISA AQFRQYGHRI SDIVYEKLTG IRGAFLTRIS YVVVNHSQKA AYSLMIADYD GYNEQMLLRS PEPLMSPSWS PDGRRLAYVS FENKKAEIFV QDLYTQVRTK VSSFPGINGA PTFSPDGKSL AVTLSKDGQP EIYVIDIATK AAKRITNHYS IDTEPSWYPD GKSLLFTSER GGRPQLYRVD LNSGKVTRET FEGEWNLGGS ITPDGRSMIF VNRTNGKFNI ARMDLSTRFM QVLTSTRLDE SPSVAPNGTM VIYGTTYQGK QVLAAVSTDG RFKARLPVGQ GEVKSPSWSP FL
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