Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2315 |
Symbol | |
ID | 4256904 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 2749475 |
End bp | 2751655 |
Gene Length | 2181 bp |
Protein Length | 726 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638122985 |
Product | diguanylate cyclase |
Protein accession | YP_738359 |
Protein GI | 114047809 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000640659 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGCGTGTAC CTGCTGTTAA TGCCGCCCAT CTAAAGTTAG CCACCTTTCT TGGTCTACTG GGTCTAATAC TCAACATTTA CCCTATTCCG CTCTTTGCTA ACGTGCAGCT TATTTTAGGT AATGCGGCGG TAGTAATAGT GGCCATTCTG CTTGGGCCTT GGTATGCCCT ATTGACAGCC TTATTTACGG CAACAGGCTT GATGTTGGCC TGGTCCAGTG CCCATGTGTA TCTGGTGTTT TTACTCGAAG CCCTTTGGTT GGGGTTTGCG CGGCGCAGAG ACGTACCTAT CCTGTACGCC AGTATAAGTT ACTGGCTGTT AATAGGTTTG CCATTAATGA GTTTGTACCT GTGGCTTATC ACGGGAATGC CAGCTTACCA CATCCCTTTT ACCACAATAA AACAAGCATT TAACGGGATT TTCTACACCA CGTTAGGGGA GCTTTGCGTG GTCGCCCTCC CCAGTTTATG GCATTTAAAA GATAGGTTGG TGAATCACAC TCGCCGAACC ATGAGTTCAC AGATCAGCTA TCTGTTTATT TTAATTACCA CCATCAGCTT ATTAACCTCA TCCTTAGTGT TTAACCATTA TTTCATGGAT AAACAACAAA TATTGATTAA TCAAAATCTT AACGACACAG GTATCTCCCT TGGACACGCC ACCGAAACCT ACATTAGTAC TAACACCCGT ACCATTGCCA GTGTCGGGAA ATTTATCAGT GTATCGGGTC TACCCTTTGA ACAATGGCAG CGCATACTCG ATAGCGTCCA GAGTCTGACC CCCAGTTTTA CCACTATGTT TATTGCCAAT GAACATGGGG AGATAGTCGC GGGAAGCCCC ATTGAAAAGC TTAATAATTT CAAAAAGCTG GAACAAAGGT TCAATGTGCA AGATAGGGAT TACTTTATCC AAGCCCTCAT TAACCACAAC ACCTTTGTGT CCCCCGTCTT TATCGGAAGG GGTTTAGATA AAGAAATCAT CATTGCTATC AGTACCCCCA TTTTTAAAGA AGGCTCTAAC ACCGCCATAG GTATTGTGCA AGGAAGCCTA GACTTGGGGT ATTTCTCCAA TATTGATAAA CAAAATCAAC ACCATGAAAC ACAGTCTATT ATTTTATTGG ATGAGAAAAA GAACATCGTT TATGCATCCG AAAGACTCGG ACTCACCCCG TTAACGCCCT TCAACTTCAT AACCGGCAGT ACTGAATACC GTACCCGATT AAAATTGATG GACATTAATC AATCAGAAGC TAATACCCCT GAATATATTT ATGCTCACCA TCAACTGAAT AATGGCTGGC ATTTGTATGT GGTGGAACCT TTCGTTCCCT TATTGAAATT AGCGCAAGAG CAATATACTA AGACGATAGC GCTGTTATTA CTGAGTATGA TAGGTGCCGT GATTATCGCT AAGGCGATCA GTCGCTTAAC GACCACTCCC CTCGCCTTAC TGGCTCAACA CTTTAGTCAA ACAAAAGATG GCAGTTTTAA TGAGGAAAAG TTTGAGCATG AACTCCTCAA CAACAGCACA CCTAAAGAAA TCTATAGTCT GTATGAGAGC TTAGAAGCGA ATCAACAAGC ATTGCTCACT CATCAATTCG AGTTAGAAGA TAAAGTGAAA CAGCGCACTA TGGATTTAGA GGCCGCTAAC CGCAAACTCA AGGACATGGC GGAGCGGGAT TCATTAACCA ATCTCTATAA CCGCCGTTAT ACCGAAAACC AATTCCTCAA AATCCAAGAT CTGTGTGAGC GTGGTCAAGA TGCGATTGCC GTAGTATTAC TCGATCTCGA TTACTTCAAA AAAGTGAACG ATACCTACGG CCATCTCGCG GGCGATGAAT GTCTGCGAGT GATGGCAGAG GTCTTATCGC GCCACTTTAA GCGCGACGTC GATCTGCTAT GCCGTTACGG CGGTGAAGAG TTTATCTTGA TATTACCTAT GTGTAATAGC CTGAAAGTCG AGCAGCATCT TAATGACTTC CGCGAAAAAC TCGCCAGCGT CATCATTACC AATCCGGCCG ATCAAGTCAC ATTTAGCGTA ACCGTAAGCA TAGGCGCCAT CATTGCGGAT GCAACTTACA GTACAACACT TGACGTCTGG TTAAAGCAGG CTGACGAAAA TCTGTATAAG GCAAAAGAGC AAGGGCGCAA CCGTGTTGTT TGCACCCTAA TCTCCTCTTA A
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Protein sequence | MRVPAVNAAH LKLATFLGLL GLILNIYPIP LFANVQLILG NAAVVIVAIL LGPWYALLTA LFTATGLMLA WSSAHVYLVF LLEALWLGFA RRRDVPILYA SISYWLLIGL PLMSLYLWLI TGMPAYHIPF TTIKQAFNGI FYTTLGELCV VALPSLWHLK DRLVNHTRRT MSSQISYLFI LITTISLLTS SLVFNHYFMD KQQILINQNL NDTGISLGHA TETYISTNTR TIASVGKFIS VSGLPFEQWQ RILDSVQSLT PSFTTMFIAN EHGEIVAGSP IEKLNNFKKL EQRFNVQDRD YFIQALINHN TFVSPVFIGR GLDKEIIIAI STPIFKEGSN TAIGIVQGSL DLGYFSNIDK QNQHHETQSI ILLDEKKNIV YASERLGLTP LTPFNFITGS TEYRTRLKLM DINQSEANTP EYIYAHHQLN NGWHLYVVEP FVPLLKLAQE QYTKTIALLL LSMIGAVIIA KAISRLTTTP LALLAQHFSQ TKDGSFNEEK FEHELLNNST PKEIYSLYES LEANQQALLT HQFELEDKVK QRTMDLEAAN RKLKDMAERD SLTNLYNRRY TENQFLKIQD LCERGQDAIA VVLLDLDYFK KVNDTYGHLA GDECLRVMAE VLSRHFKRDV DLLCRYGGEE FILILPMCNS LKVEQHLNDF REKLASVIIT NPADQVTFSV TVSIGAIIAD ATYSTTLDVW LKQADENLYK AKEQGRNRVV CTLISS
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