| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2219 |
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| Symbol | def |
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| ID | 4255950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 2631849 |
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| End bp | 2632340 |
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| Gene Length | 492 bp |
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| Protein Length | 163 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638122887 |
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| Product | peptide deformylase |
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| Protein accession | YP_738264 |
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| Protein GI | 114047714 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.025374 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.833863 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTGTAC TCGATATTCT GACAATTCCC GATGAGCGTC TAAAGCGCAA AGCACAACCC
GTAAAAGACA TTGAAGCGAT TCAGGGATTT ATCGATGATT TAATCGAAAC CATGTACCAC
ACCGACGATG GTATCGGTCT GGCCTCGACC CAAGTGGGCA GCACAGATGC GGTGATTGTG
ATCGATTTAT CCGAAAATCG CGATCAACCC TTAGTGCTGA TTAATCCAGA GATTGTTGAA
AAGTCTGGCG AATATGTGGG TGAAGAAGGC TGTCTTTCTA TCCCAGGTTA CCGCGCCAAA
GTGAGCCGTT TTGAAAAGGT CAAAGTCACC GCCTTAGACA GACAGGGCAA AGCGATTGAA
ATCGAAACCG ATGACTTTTT AGCCATTGTT TTGCAACACG AAATCGACCA TTTACACGGT
AAAGTGTTTA TCGAACATTT ATCGACCTTA AAGCAGCAAA TCGCGTTGAA AAAAGTGCGT
AAATACGCCT AA
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| Protein sequence | MAVLDILTIP DERLKRKAQP VKDIEAIQGF IDDLIETMYH TDDGIGLAST QVGSTDAVIV
IDLSENRDQP LVLINPEIVE KSGEYVGEEG CLSIPGYRAK VSRFEKVKVT ALDRQGKAIE
IETDDFLAIV LQHEIDHLHG KVFIEHLSTL KQQIALKKVR KYA
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