| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2160 |
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| Symbol | |
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| ID | 4257641 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 2557147 |
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| End bp | 2559669 |
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| Gene Length | 2523 bp |
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| Protein Length | 840 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638122828 |
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| Product | (NiFe) hydrogenase maturation protein HypF |
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| Protein accession | YP_738205 |
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| Protein GI | 114047655 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0068] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.66513 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATGC CGCCAGATAA GCGAAGAATA CCGAGATTGA AAAAAACCAC CTCACCCGCC
AATCGAACCG AGCAACTCGA GCGCCGCCAA TTGCATATCA CGGGCATAGT GCAAGGCGTG
GGCTTTCGCC CCTTTGTTTA CCGCTGGGCG AGTGAGCTTA AATTAACCGG CACAGTGCTA
AATAATGCCA ATGGCGTGAT GATTGAGCTG CAAGGCCCCA CCGCACACTT GGATAGCTTT
GTGCGTGAGT TAACCACCAA TCCGCCGCCA CTGGCGCGCA TCGATCAGAT GACCCAGAGT
CCGTTAGCGG TAAACCTTGA AGAGACTAGC TTCGATATTA TTCAAAGTGA TAGCCAAAGT
GATGACCAAA GTGATGAATC TGGTGAGCAT CATTTAGCCG CCCTCGTTGC CGTATCGGCC
GACAAGAGTA TCTGTCAGGA TTGCTTAAGC GATATGCATA ATCCGCAGGA TCGCCACTAT
GGCTATGCCT TTACCAATTG CACTAACTGC GGCCCAAGAT ACACTATTAT CAATGCCTTA
CCCTACGATC GCCATCATAC CGCTATGGCA GATTTCGCCA TGTGCCCCGA CTGCGCCAAG
GCCTATCAAG ATCCGCTAAA TCGCAGATAC CACGCCCAGC CCGTAAGTTG CCCTAAGTGT
GGTCCTCAAT TGAGTTTAAA ATCGCCTCAG GGCGAGTTAC TTGCACCTAA TTCCTTGTCC
GCTTTGCAAG ATAACAGCCT TGCAGTATTG TCGGCGGCGG CCGAGAAACT GGCCCAAGGG
CAGATTCTTG CGATAAAGGG TTTAGGTGGC TTCCACTTAA TGTGCGATGC AACCAACACT
TTAGCCGTCA ATCAATTAAG GCAACGCAAG CAACGAAAAG CCAAGCCGCT AGCGGTGATG
ATGCCGAGCA TCGAAGTGGC AAAACGCTAT GTAACGGGTA CACAGGCAGA GTGGCAAACC
TTAAGTTCGC AGGAGCGGCC CATCGTACTG ATGCAGGCGC TGGATAAACA CAATCTGAGC
CATCAGATTG CGCCTAATAT CCCAAAACTC GGAATATTTT TGCCCTACAC ACCGCTGCAT
CATTTACTGC TCGGGCAATT TAACGGCCCA CTGGTCGCGA CAAGTGCGAA TGTCTCTGGC
GAACCGATTA TCACCGATTG TGATGAGCTT ATCAGCCAAC TAGGCCATGT GGTGGATGCC
ATAGTCGATC ACAACCGCCC CATACTCAAC GGCTGTGATG ACAGCGTGGT GCAACTTATC
CAACCGCCAA ACGGCTGTGC GCCACAGGTG CAAGTGCTGC GTTTAGCGCG GGGATATGCG
CCCTTAAGCT TCCCATTACC CAAGCCGTTG AGTCATTCCA TACTTGCCGT GGGCGCCCAA
CAAAAAAATG CCATTGCGTT AGGTTTTGGC TCGAATGTGT TTTTAAGCCC GCATATTGGC
GATCTCTTTA GTGTCAGCGC CGAGCAGTAC TTCGAGCGCA CTTTGGCGAC CTTCGCCCGT
CTGTATCATT TCAACCCCGA GCTGATTGTC CACGATAAGC ACCCAGACTA CGCACCATCG
CGCTGGGCAG AGACGCAGCA ACAGCACAGC CTGGATACGC AAAGCCAAGA CACGCGCCCA
ATCCAAACCT TAAGTGTGCA GCATCACCAT GCCCATGTGC TGAGCGTGAT GGCCATCAAT
CAATATCAAG AGCCAGTATT AGGCTTTAGT TTCGATGGCA CAGGGCTTGG GAACGATGGC
AGCCTCTGGG GCGGTGAAGT CTTACTGACC ACCCTTAACG GCGCCGAGCG GCTTGCCCAT
TTCGAGGCTA TTCCCTTGCT AGGTGGAGAA CAGGCAATTA AGCAGCCTGT GCGATTGCTG
CTGGCACTGC TGTTTCAGCA GATGAGTCTC GAGGAAGTGC AAACTCTGAC GTTGCCGATT
CTGACAATCT TAAGCCCCAT CACCTTAAGC AATCTGCATC GGATCTGGCA AAACGGCCAT
GGGATTAACA GCTCCTCGGT GGGACGCTTG TTCGATGCCC TCGCCTGCGC CTTAGGCTTT
ATCGACACCA CCCAATTTGA AGGCCAAGCG GGCATGTTAA TTGAAGCGGC AGCAAGACGG
GCCGACGCCA AACAACTGCC GACGCTGATG CTCGACTTGC CCTTGGAAAT CTCGGATATG
CCCAGTGACA GCTCGATGCA CGAACCGCAT ATCTGGCGCA GTAGCCAACT CTTTAAGCAG
ATAATCACGC TGATCACCGA AGCGCCGCTC ACTGACGTTC TGCAAGCGCA GATCGCCCGC
GCCTTTTTGC ATAGTGTGGG AGATGCCATT TGTGGTTATG CCGCGCGCTA CCCAACTCTG
CCCGTAGCGC TGTGTGGCGG CGTGTTTCAA AACCAATATT TGCTCGAATA TTGCCTCAAT
AAACTGCACC AACAGGGTAA CACTGTGCTG CCCAATAAAC ATATTCCCGT CAACGATGGC
GGTATCGCCC TTGGGCAGCT TTGGTATGGA ATACATCAAA AGGCCAATAT TGAGTGCGAA
TAA
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| Protein sequence | MQMPPDKRRI PRLKKTTSPA NRTEQLERRQ LHITGIVQGV GFRPFVYRWA SELKLTGTVL
NNANGVMIEL QGPTAHLDSF VRELTTNPPP LARIDQMTQS PLAVNLEETS FDIIQSDSQS
DDQSDESGEH HLAALVAVSA DKSICQDCLS DMHNPQDRHY GYAFTNCTNC GPRYTIINAL
PYDRHHTAMA DFAMCPDCAK AYQDPLNRRY HAQPVSCPKC GPQLSLKSPQ GELLAPNSLS
ALQDNSLAVL SAAAEKLAQG QILAIKGLGG FHLMCDATNT LAVNQLRQRK QRKAKPLAVM
MPSIEVAKRY VTGTQAEWQT LSSQERPIVL MQALDKHNLS HQIAPNIPKL GIFLPYTPLH
HLLLGQFNGP LVATSANVSG EPIITDCDEL ISQLGHVVDA IVDHNRPILN GCDDSVVQLI
QPPNGCAPQV QVLRLARGYA PLSFPLPKPL SHSILAVGAQ QKNAIALGFG SNVFLSPHIG
DLFSVSAEQY FERTLATFAR LYHFNPELIV HDKHPDYAPS RWAETQQQHS LDTQSQDTRP
IQTLSVQHHH AHVLSVMAIN QYQEPVLGFS FDGTGLGNDG SLWGGEVLLT TLNGAERLAH
FEAIPLLGGE QAIKQPVRLL LALLFQQMSL EEVQTLTLPI LTILSPITLS NLHRIWQNGH
GINSSSVGRL FDALACALGF IDTTQFEGQA GMLIEAAARR ADAKQLPTLM LDLPLEISDM
PSDSSMHEPH IWRSSQLFKQ IITLITEAPL TDVLQAQIAR AFLHSVGDAI CGYAARYPTL
PVALCGGVFQ NQYLLEYCLN KLHQQGNTVL PNKHIPVNDG GIALGQLWYG IHQKANIECE
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