Gene Shewmr7_2138 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_2138 
Symbol 
ID4255272 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp2525626 
End bp2529507 
Gene Length3882 bp 
Protein Length1293 aa 
Translation table11 
GC content51% 
IMG OID638122806 
ProductATP-dependent helicase HrpA 
Protein accessionYP_738183 
Protein GI114047633 
COG category[L] Replication, recombination and repair 
COG ID[COG1643] HrpA-like helicases 
TIGRFAM ID[TIGR01967] ATP-dependent helicase HrpA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.489982 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000558366 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGGTTTTGA ACTCTGACAA ACATCCGCTA TCGAGCGCCT TTCTCAAGCA ATGCTTTCAA 
AGTGATGCCT CGCGGATCCG CCGCCGTTTA TTTAAGCTCA ATAAAGAAGC CGATTCTGAT
AAGAAAACCC AAGAGTTAGC CAAACTTGCC GAGCAGGCGC AAGCAGCGTT CGAAAAGGTC
GAGCAGCGCC TTAAGGCGCG TCCGAAAATC CAATACCCCG ATAATCTGCC CGTTAGCGGC
ATGCGCGAAG AGATCGCTAA AGCTATCAGT GAAAACCAAG TGGTGATCAT TGCGGGTGAA
ACTGGCTCGG GTAAAACCAC TCAGCTCCCC AAAATCTGTT TAGAACTGGG CCTTGGTAGC
CGCGGCTTTA TTGGTCATAC CCAGCCGCGG CGTTTAGCGG CGCGCAGCGT GGCGACACGT
GTTGCCGAAG AATTACAAAG TCCGCTCGGT GAAGTGGTGG GCTTTAAGGT GCGTTTTGCC
GATGCCTTAA AGAGTGAATC CTATATCAAG CTGATGACTG ACGGGATTTT ACTGGCCGAG
CTCACCTCGG ATCGTTATTT AGATCAATAC GATACAATCA TTATCGACGA GGCGCACGAG
CGTAGCCTCA ACATCGATTT TATCTTGGGT TACCTCAAGC AAATTCTGAA AAAACGCGCC
GATCTTAAGA TCATCATCAC CTCGGCAACT ATCGATGTTG AGCGTTTTTC TAAGCATTTC
AATAATGCAC CTATTATCGA AGTCTCTGGC CGGACGTATC CGGTGGAAAC CCGTTATCGC
CCGTTGGTGC AAGATACCGA AGCGGATCTC GACCAAATCG AAGGGATTTT TGCTGCCGTT
GACGAATTAG TCGCCGAAGG CTTGGGCGAT ATTCTGATCT TTATGAACGG CGAGCGCGAA
ATTCGTGATA CCGCCGAGCA GCTTAATCGT CGCAATTACC GCGATACTGA GATTTTGCCC
TTATATGCGC GCCTCTCCTA CGGCGAGCAG TCCAAGGTAT TCAGCAGCCA TACTGGGCGT
CGCATCGTGC TTGCCACTAA CGTGGCGGAA ACGTCGCTCA CCGTCCCAGG TATTCGTTAT
GTAATTGACC CAGGCACAGC GCGGATCAGC CGTTACAGTT ATCGCACTAA GGTGCAGCGC
CTGCCCATCG AGCCCATTTC ACAGGCCAGT GCCAATCAGC GTCAAGGCCG CTGCGGCCGT
GTTGGCCCAG GTATTTGTAT TCGCTTATAC GATGAGGCGG ATTTTAACAG TCGTCCCGCG
TTTACCGACC CCGAAATCCT ACGCACCAAC TTAGCCTCGG TGATTTTGCA GATGCTTGCC
ATCGGCCTTG GTGATATTGC GGCGTTCCCC TTTATTGAGC CGCCCGATCC GCGCCATATT
CGCGATGGCT TCTTACTGCT TGAGGAACTA CAAGCCGTTA AGCAGCAGAA GGGCAATATT
GTGTTAACGC CGCTTGGGCG TCAGTTATCG CAGATCCCGG TGGATCCGCG TTTAGCGCGT
ATGGTGGTGG AGAGTCATCA GCTGGGCTGT TTGCAGGAAG TGTTAGTGAT TGCCGCGGGT
CTGTCGATTC AAGATCCCCG CGAGCGTCCC ATGGATAAAA AGCAGGCGTC CGATGAGGCC
CATCGCCGTT TTGTCGATCC CCATTCAGAT TTTGTCAGTT GGGTGAACCT ATGGCAGCAC
TTAAAAGAGC AGCAAAAGGA ATTATCCGCC AGTCAGTTCC GTAAAAAATG CCGCGACGAG
TACTTAGCCT ACCTGCGTGT GCGCGAATGG CAGGATTTAT ATACTCAGTT AAAACAAGCG
GTTCACGATT TAAAGTGGCG TTTAAACGAC ACGCCAGCCA ACTACGATGC GCTGCACCGT
GCGTTGTTAT CGGGTCTACT TAGCCATATC GGCTTTAAGG ACAATAACAA CGAGTACTTA
GGCGCGCGCA ATCGTAAGTT TTTTGTGTTC CCAGGTTCAC CGCTGGCGAA AAAAGGCCCG
AAATGGATTA TGGCGGCGGA GCTGACCGAA ACCTCTAAGC TGTTTGCTCG CTGCTGCGCC
AAAATTGAGC CTGAGTGGCT CGAGCCGTTA GCGGCGCATC TGATTAAAAA GAATCACCTA
GAGCCGCATT TTGAGGCAAA ACAGGGCAGT GTGATTGCCT TTGAAAACCA AGTGCTTTAC
GGTTTGACCG TCGTACATCG CCGCCGCGTG CAATACGGGC CGATTAATCC TGTTGAAGCG
CGGGAGATCT TTATCCGTAG CGCGCTTGCA GAAGGGCAAT TACAGACCAA AGAAGCCTTC
TTTATCGCTA ACCAAAAGCT ATTAGAGGAT GTCGAAGCGC TCGAGCACAA GTCCCGTCGC
CGCGATATTT TGGTCGATGA ACAAGTGTTG ATGGACTTTT ACGAGCCGCG CATTCCCGAA
GGCATCTATA ACGCGCCTAA GTTCTTTAGC TGGTGGAAAG AAGCGCGCCG AACTCAGCCC
GATTTACTCG ATTTTAATAA GTCACTGCTG ATGCAGCGCA GTGCCGATCA CATATCGGCG
CTCGATTTCC CCGATACTTG GCACAAGGGC AATATTCGCT TGCAATTGAG TTATCACTTC
GACCCCGCGG CGAGTGATGA TGGCGTCTCT GTGCATATTC CTGTGGCGCT ACTCAATCAA
ATCGATGATA CGGACTTCGA TTGGCTGGTG GCAGGGATGC GTGAGGAGAA ATGCGTCGCC
CTGATTAAGT CTTTGCCTAA GGGGCTAAGA CGTAACTTTG TGCCTGCGCC CGATTATGCC
CGAGCCTGCG TGCAAGCAAT GCAGCCCTTT AGCACCAGTT TACTCGATGC CATGTGCAAA
CAGCTTTTGC GTATGAGTGG TACGCGCGTC AATCCCGAAG ATTTTGATGT CACGCAGATG
CCAGCGCATT TGCAGATGAA CTTTAAGATT GAGGACGACA AGGGCAAATT AGTGGCACAG
GGGCGGGTAC TCGATACCTT AAAGGCCGAG TTACAGGGCG TGGTCGCTAA GGCGATTCGT
CAAGTGGCGG ATAAGGGCAT TGAAAAGGAA GCGCTCACCG AGTGGTCCTT TGGCGACTTA
CCGAAACAAT TTGAACAGCG TAAGGGCAAC TACCAAGTGC GGGCGTTCCC TGCACTGATT
GACAATAAAG ACTCGGTTGC CATCAAATTA TTTGATGATG AATTTGAGGC GCAGGCAGCG
CATCGTCAAG GTCTACGTCG TCTGCTGTTA CTCAACATTC CATCGCCGGT AAAACACCTG
CAACAGGCGC TGCCCAACAA GGCAAAATTG GCGATGTATT TCAATCCATT TGGCCAAGTA
CAAATTCTGA TTGATGACAT CATTGCCGCA GCGGTGCAGC AATTACTCGA TGAAAAGGCG
CTGGATGTGC GCGATGCCGC CCAGTTCGAG CAGGCCAAGG ATTGGGTGCG CCAAGAGCTG
AATCCAACGG CTGAGCAAAT CGCCCTAAAA GTGGAGCAGA TTTTGACGCT CTATCAAGGC
ATTAAAAAGC GGACTAAGGG TAAAATCAGC TTAGATATCG CTTTTGCGAT GAGTGATATT
CAAAGCCAAT TAGACCTATT AGTGTTCAAG GGATTTGTCG AAGCCTGTGG TTGGAATCGC
TTAGCGGATG TGGCGCGTTA CTTAAAGGCG ATTGAAACCC GTATCGATAA ACTGCCCGTG
GATCCGACCC GTGACCGTTT GCATATGCAG AGTATCACTA AAGTGCAGGA GGCCTTAGCG
GCGCAGCTTG CCAAGGTGCC GCGCTCACAG CCCGTGCCTG CGGCACTGAT TGAAGCCCGT
TGGATGATTG AAGAGTACCG GGTGTCATGC TTTGCACAGG CGCTGGGAAC GGCTTATCCG
ATCTCGGAAA AGCGTATCTT AAACCATATT CTGCTGAGTT AA
 
Protein sequence
MVLNSDKHPL SSAFLKQCFQ SDASRIRRRL FKLNKEADSD KKTQELAKLA EQAQAAFEKV 
EQRLKARPKI QYPDNLPVSG MREEIAKAIS ENQVVIIAGE TGSGKTTQLP KICLELGLGS
RGFIGHTQPR RLAARSVATR VAEELQSPLG EVVGFKVRFA DALKSESYIK LMTDGILLAE
LTSDRYLDQY DTIIIDEAHE RSLNIDFILG YLKQILKKRA DLKIIITSAT IDVERFSKHF
NNAPIIEVSG RTYPVETRYR PLVQDTEADL DQIEGIFAAV DELVAEGLGD ILIFMNGERE
IRDTAEQLNR RNYRDTEILP LYARLSYGEQ SKVFSSHTGR RIVLATNVAE TSLTVPGIRY
VIDPGTARIS RYSYRTKVQR LPIEPISQAS ANQRQGRCGR VGPGICIRLY DEADFNSRPA
FTDPEILRTN LASVILQMLA IGLGDIAAFP FIEPPDPRHI RDGFLLLEEL QAVKQQKGNI
VLTPLGRQLS QIPVDPRLAR MVVESHQLGC LQEVLVIAAG LSIQDPRERP MDKKQASDEA
HRRFVDPHSD FVSWVNLWQH LKEQQKELSA SQFRKKCRDE YLAYLRVREW QDLYTQLKQA
VHDLKWRLND TPANYDALHR ALLSGLLSHI GFKDNNNEYL GARNRKFFVF PGSPLAKKGP
KWIMAAELTE TSKLFARCCA KIEPEWLEPL AAHLIKKNHL EPHFEAKQGS VIAFENQVLY
GLTVVHRRRV QYGPINPVEA REIFIRSALA EGQLQTKEAF FIANQKLLED VEALEHKSRR
RDILVDEQVL MDFYEPRIPE GIYNAPKFFS WWKEARRTQP DLLDFNKSLL MQRSADHISA
LDFPDTWHKG NIRLQLSYHF DPAASDDGVS VHIPVALLNQ IDDTDFDWLV AGMREEKCVA
LIKSLPKGLR RNFVPAPDYA RACVQAMQPF STSLLDAMCK QLLRMSGTRV NPEDFDVTQM
PAHLQMNFKI EDDKGKLVAQ GRVLDTLKAE LQGVVAKAIR QVADKGIEKE ALTEWSFGDL
PKQFEQRKGN YQVRAFPALI DNKDSVAIKL FDDEFEAQAA HRQGLRRLLL LNIPSPVKHL
QQALPNKAKL AMYFNPFGQV QILIDDIIAA AVQQLLDEKA LDVRDAAQFE QAKDWVRQEL
NPTAEQIALK VEQILTLYQG IKKRTKGKIS LDIAFAMSDI QSQLDLLVFK GFVEACGWNR
LADVARYLKA IETRIDKLPV DPTRDRLHMQ SITKVQEALA AQLAKVPRSQ PVPAALIEAR
WMIEEYRVSC FAQALGTAYP ISEKRILNHI LLS