Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2138 |
Symbol | |
ID | 4255272 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 2525626 |
End bp | 2529507 |
Gene Length | 3882 bp |
Protein Length | 1293 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638122806 |
Product | ATP-dependent helicase HrpA |
Protein accession | YP_738183 |
Protein GI | 114047633 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.489982 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000558366 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | TTGGTTTTGA ACTCTGACAA ACATCCGCTA TCGAGCGCCT TTCTCAAGCA ATGCTTTCAA AGTGATGCCT CGCGGATCCG CCGCCGTTTA TTTAAGCTCA ATAAAGAAGC CGATTCTGAT AAGAAAACCC AAGAGTTAGC CAAACTTGCC GAGCAGGCGC AAGCAGCGTT CGAAAAGGTC GAGCAGCGCC TTAAGGCGCG TCCGAAAATC CAATACCCCG ATAATCTGCC CGTTAGCGGC ATGCGCGAAG AGATCGCTAA AGCTATCAGT GAAAACCAAG TGGTGATCAT TGCGGGTGAA ACTGGCTCGG GTAAAACCAC TCAGCTCCCC AAAATCTGTT TAGAACTGGG CCTTGGTAGC CGCGGCTTTA TTGGTCATAC CCAGCCGCGG CGTTTAGCGG CGCGCAGCGT GGCGACACGT GTTGCCGAAG AATTACAAAG TCCGCTCGGT GAAGTGGTGG GCTTTAAGGT GCGTTTTGCC GATGCCTTAA AGAGTGAATC CTATATCAAG CTGATGACTG ACGGGATTTT ACTGGCCGAG CTCACCTCGG ATCGTTATTT AGATCAATAC GATACAATCA TTATCGACGA GGCGCACGAG CGTAGCCTCA ACATCGATTT TATCTTGGGT TACCTCAAGC AAATTCTGAA AAAACGCGCC GATCTTAAGA TCATCATCAC CTCGGCAACT ATCGATGTTG AGCGTTTTTC TAAGCATTTC AATAATGCAC CTATTATCGA AGTCTCTGGC CGGACGTATC CGGTGGAAAC CCGTTATCGC CCGTTGGTGC AAGATACCGA AGCGGATCTC GACCAAATCG AAGGGATTTT TGCTGCCGTT GACGAATTAG TCGCCGAAGG CTTGGGCGAT ATTCTGATCT TTATGAACGG CGAGCGCGAA ATTCGTGATA CCGCCGAGCA GCTTAATCGT CGCAATTACC GCGATACTGA GATTTTGCCC TTATATGCGC GCCTCTCCTA CGGCGAGCAG TCCAAGGTAT TCAGCAGCCA TACTGGGCGT CGCATCGTGC TTGCCACTAA CGTGGCGGAA ACGTCGCTCA CCGTCCCAGG TATTCGTTAT GTAATTGACC CAGGCACAGC GCGGATCAGC CGTTACAGTT ATCGCACTAA GGTGCAGCGC CTGCCCATCG AGCCCATTTC ACAGGCCAGT GCCAATCAGC GTCAAGGCCG CTGCGGCCGT GTTGGCCCAG GTATTTGTAT TCGCTTATAC GATGAGGCGG ATTTTAACAG TCGTCCCGCG TTTACCGACC CCGAAATCCT ACGCACCAAC TTAGCCTCGG TGATTTTGCA GATGCTTGCC ATCGGCCTTG GTGATATTGC GGCGTTCCCC TTTATTGAGC CGCCCGATCC GCGCCATATT CGCGATGGCT TCTTACTGCT TGAGGAACTA CAAGCCGTTA AGCAGCAGAA GGGCAATATT GTGTTAACGC CGCTTGGGCG TCAGTTATCG CAGATCCCGG TGGATCCGCG TTTAGCGCGT ATGGTGGTGG AGAGTCATCA GCTGGGCTGT TTGCAGGAAG TGTTAGTGAT TGCCGCGGGT CTGTCGATTC AAGATCCCCG CGAGCGTCCC ATGGATAAAA AGCAGGCGTC CGATGAGGCC CATCGCCGTT TTGTCGATCC CCATTCAGAT TTTGTCAGTT GGGTGAACCT ATGGCAGCAC TTAAAAGAGC AGCAAAAGGA ATTATCCGCC AGTCAGTTCC GTAAAAAATG CCGCGACGAG TACTTAGCCT ACCTGCGTGT GCGCGAATGG CAGGATTTAT ATACTCAGTT AAAACAAGCG GTTCACGATT TAAAGTGGCG TTTAAACGAC ACGCCAGCCA ACTACGATGC GCTGCACCGT GCGTTGTTAT CGGGTCTACT TAGCCATATC GGCTTTAAGG ACAATAACAA CGAGTACTTA GGCGCGCGCA ATCGTAAGTT TTTTGTGTTC CCAGGTTCAC CGCTGGCGAA AAAAGGCCCG AAATGGATTA TGGCGGCGGA GCTGACCGAA ACCTCTAAGC TGTTTGCTCG CTGCTGCGCC AAAATTGAGC CTGAGTGGCT CGAGCCGTTA GCGGCGCATC TGATTAAAAA GAATCACCTA GAGCCGCATT TTGAGGCAAA ACAGGGCAGT GTGATTGCCT TTGAAAACCA AGTGCTTTAC GGTTTGACCG TCGTACATCG CCGCCGCGTG CAATACGGGC CGATTAATCC TGTTGAAGCG CGGGAGATCT TTATCCGTAG CGCGCTTGCA GAAGGGCAAT TACAGACCAA AGAAGCCTTC TTTATCGCTA ACCAAAAGCT ATTAGAGGAT GTCGAAGCGC TCGAGCACAA GTCCCGTCGC CGCGATATTT TGGTCGATGA ACAAGTGTTG ATGGACTTTT ACGAGCCGCG CATTCCCGAA GGCATCTATA ACGCGCCTAA GTTCTTTAGC TGGTGGAAAG AAGCGCGCCG AACTCAGCCC GATTTACTCG ATTTTAATAA GTCACTGCTG ATGCAGCGCA GTGCCGATCA CATATCGGCG CTCGATTTCC CCGATACTTG GCACAAGGGC AATATTCGCT TGCAATTGAG TTATCACTTC GACCCCGCGG CGAGTGATGA TGGCGTCTCT GTGCATATTC CTGTGGCGCT ACTCAATCAA ATCGATGATA CGGACTTCGA TTGGCTGGTG GCAGGGATGC GTGAGGAGAA ATGCGTCGCC CTGATTAAGT CTTTGCCTAA GGGGCTAAGA CGTAACTTTG TGCCTGCGCC CGATTATGCC CGAGCCTGCG TGCAAGCAAT GCAGCCCTTT AGCACCAGTT TACTCGATGC CATGTGCAAA CAGCTTTTGC GTATGAGTGG TACGCGCGTC AATCCCGAAG ATTTTGATGT CACGCAGATG CCAGCGCATT TGCAGATGAA CTTTAAGATT GAGGACGACA AGGGCAAATT AGTGGCACAG GGGCGGGTAC TCGATACCTT AAAGGCCGAG TTACAGGGCG TGGTCGCTAA GGCGATTCGT CAAGTGGCGG ATAAGGGCAT TGAAAAGGAA GCGCTCACCG AGTGGTCCTT TGGCGACTTA CCGAAACAAT TTGAACAGCG TAAGGGCAAC TACCAAGTGC GGGCGTTCCC TGCACTGATT GACAATAAAG ACTCGGTTGC CATCAAATTA TTTGATGATG AATTTGAGGC GCAGGCAGCG CATCGTCAAG GTCTACGTCG TCTGCTGTTA CTCAACATTC CATCGCCGGT AAAACACCTG CAACAGGCGC TGCCCAACAA GGCAAAATTG GCGATGTATT TCAATCCATT TGGCCAAGTA CAAATTCTGA TTGATGACAT CATTGCCGCA GCGGTGCAGC AATTACTCGA TGAAAAGGCG CTGGATGTGC GCGATGCCGC CCAGTTCGAG CAGGCCAAGG ATTGGGTGCG CCAAGAGCTG AATCCAACGG CTGAGCAAAT CGCCCTAAAA GTGGAGCAGA TTTTGACGCT CTATCAAGGC ATTAAAAAGC GGACTAAGGG TAAAATCAGC TTAGATATCG CTTTTGCGAT GAGTGATATT CAAAGCCAAT TAGACCTATT AGTGTTCAAG GGATTTGTCG AAGCCTGTGG TTGGAATCGC TTAGCGGATG TGGCGCGTTA CTTAAAGGCG ATTGAAACCC GTATCGATAA ACTGCCCGTG GATCCGACCC GTGACCGTTT GCATATGCAG AGTATCACTA AAGTGCAGGA GGCCTTAGCG GCGCAGCTTG CCAAGGTGCC GCGCTCACAG CCCGTGCCTG CGGCACTGAT TGAAGCCCGT TGGATGATTG AAGAGTACCG GGTGTCATGC TTTGCACAGG CGCTGGGAAC GGCTTATCCG ATCTCGGAAA AGCGTATCTT AAACCATATT CTGCTGAGTT AA
|
Protein sequence | MVLNSDKHPL SSAFLKQCFQ SDASRIRRRL FKLNKEADSD KKTQELAKLA EQAQAAFEKV EQRLKARPKI QYPDNLPVSG MREEIAKAIS ENQVVIIAGE TGSGKTTQLP KICLELGLGS RGFIGHTQPR RLAARSVATR VAEELQSPLG EVVGFKVRFA DALKSESYIK LMTDGILLAE LTSDRYLDQY DTIIIDEAHE RSLNIDFILG YLKQILKKRA DLKIIITSAT IDVERFSKHF NNAPIIEVSG RTYPVETRYR PLVQDTEADL DQIEGIFAAV DELVAEGLGD ILIFMNGERE IRDTAEQLNR RNYRDTEILP LYARLSYGEQ SKVFSSHTGR RIVLATNVAE TSLTVPGIRY VIDPGTARIS RYSYRTKVQR LPIEPISQAS ANQRQGRCGR VGPGICIRLY DEADFNSRPA FTDPEILRTN LASVILQMLA IGLGDIAAFP FIEPPDPRHI RDGFLLLEEL QAVKQQKGNI VLTPLGRQLS QIPVDPRLAR MVVESHQLGC LQEVLVIAAG LSIQDPRERP MDKKQASDEA HRRFVDPHSD FVSWVNLWQH LKEQQKELSA SQFRKKCRDE YLAYLRVREW QDLYTQLKQA VHDLKWRLND TPANYDALHR ALLSGLLSHI GFKDNNNEYL GARNRKFFVF PGSPLAKKGP KWIMAAELTE TSKLFARCCA KIEPEWLEPL AAHLIKKNHL EPHFEAKQGS VIAFENQVLY GLTVVHRRRV QYGPINPVEA REIFIRSALA EGQLQTKEAF FIANQKLLED VEALEHKSRR RDILVDEQVL MDFYEPRIPE GIYNAPKFFS WWKEARRTQP DLLDFNKSLL MQRSADHISA LDFPDTWHKG NIRLQLSYHF DPAASDDGVS VHIPVALLNQ IDDTDFDWLV AGMREEKCVA LIKSLPKGLR RNFVPAPDYA RACVQAMQPF STSLLDAMCK QLLRMSGTRV NPEDFDVTQM PAHLQMNFKI EDDKGKLVAQ GRVLDTLKAE LQGVVAKAIR QVADKGIEKE ALTEWSFGDL PKQFEQRKGN YQVRAFPALI DNKDSVAIKL FDDEFEAQAA HRQGLRRLLL LNIPSPVKHL QQALPNKAKL AMYFNPFGQV QILIDDIIAA AVQQLLDEKA LDVRDAAQFE QAKDWVRQEL NPTAEQIALK VEQILTLYQG IKKRTKGKIS LDIAFAMSDI QSQLDLLVFK GFVEACGWNR LADVARYLKA IETRIDKLPV DPTRDRLHMQ SITKVQEALA AQLAKVPRSQ PVPAALIEAR WMIEEYRVSC FAQALGTAYP ISEKRILNHI LLS
|
| |