| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2118 |
|---|
| Symbol | |
|---|
| ID | 4255533 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2505122 |
|---|
| End bp | 2506027 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638122786 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_738163 |
|---|
| Protein GI | 114047613 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.697592 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00772115 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGAATTA ATGATCTTAG GCTTTTTTTG TTGGTCGTTG AATTAGGCAG TTTTGCCTCC
GCGGCCAGTT CGATTGGGAT CCCGAGAGCT TCGGTCAGCC GGCGTATCGG TGAGTTAGAG
GCGGATCTCG GTACTAAACT GTTTACGCGT ACGACACGTC AGTTGTCACT GACCCCCACA
GGGGAAAATT ACCATCAGCA GTTAATGGAA ATTATTCCAA GACTCGAGTC ACTCAATGAA
TGTGTCAAAA ATCAACGCAA TATGCCAACG GGAACCGTTA AGTTGGGATT AGTGGGTGAA
GCCGATGTTT TAACACATAA TTTACTGCAG GATTTTTTGA AAAATTATCC CTTAATTACG
ATAGAAACCC ATGTCAGTAA TCTGGGGTAT CACGATATTT TAAATTATGG TCTGGATGCC
TGTATTCATA TTGGCAGTAT CAAAGACAAT TCATTTATCG CCCGGCCTTT AATGCGGGTA
TCTCGAAAGT TATACGCAAG TCCTGATTAT ATCGCGACCT ATGGTATGCC AACTTCGTTG
GAGGATCTTA ATCAACATGC ACTCATGATC TATCGTAAGC AAAATGGTGA GTTAGAAGAC
AGTTGGAAAT TCAACTTAGG TGAATATCGC GTGAAGAGTC GAGTTATTTC TAACAGCAGT
CATTACGTTC GCCATGCCAT TTTAAATGGA GCAGGGATCA GTTTATTAGC CGAATTAAGT
GTAGTTGAGC ACTTGCGATT GGGTAATTTG GTCGAAGTTT TGCCCGAATA TGAAGTTTAT
GTTGATGATG CTTGGTTGGT CTATCCGAGC CGCAAAGGCA TGACCCATGC GGCTCGGCTG
CTGATCGATA GTTTGATCCA AGAGGCGACC AAGACGCCAA ATGTCACATT GTCACAAAAT
TCGTGA
|
|---|
| Protein sequence | MRINDLRLFL LVVELGSFAS AASSIGIPRA SVSRRIGELE ADLGTKLFTR TTRQLSLTPT
GENYHQQLME IIPRLESLNE CVKNQRNMPT GTVKLGLVGE ADVLTHNLLQ DFLKNYPLIT
IETHVSNLGY HDILNYGLDA CIHIGSIKDN SFIARPLMRV SRKLYASPDY IATYGMPTSL
EDLNQHALMI YRKQNGELED SWKFNLGEYR VKSRVISNSS HYVRHAILNG AGISLLAELS
VVEHLRLGNL VEVLPEYEVY VDDAWLVYPS RKGMTHAARL LIDSLIQEAT KTPNVTLSQN
S
|
|---|
| |