| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2114 |
|---|
| Symbol | |
|---|
| ID | 4258100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2497945 |
|---|
| End bp | 2499225 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638122782 |
|---|
| Product | PqiA family integral membrane protein |
|---|
| Protein accession | YP_738159 |
|---|
| Protein GI | 114047609 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2995] Uncharacterized paraquat-inducible protein A |
|---|
| TIGRFAM ID | [TIGR00155] integral membrane protein, PqiA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.387585 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0225112 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCACAGT GTGGTTCTTC ACCCCAGCAT GAGGGGATTT TACAGGCCTG TGAGGAATGT
GGTTTAGTCA CGCCTTACAT TGAGCCCAAG CCAGGTTATC GTGCCCATTG TCCAAGATGT
CAGCATAGTT TGCAGGCCGC ATTAGCCACA CCCTTTCAGC CGATTTGGGC CTATGGGATC
GCGACCTTAA TGATGTTGGG ATTGAGTCTG GGGTTCCCTT TCTTATCATT CAGTGTGCAG
GGCTTATCAC AACAAGCCAG CTTATGGTCT GCATTGATCA GTATGCATTA TGCCAGTAAT
AATTTGTTGG CCATGCTCAT CTTGTTGTGT GTGGTGATTT TGCCGCTGAT TTATATCAGT
TTTTCAATGT TCATTTATAG GCAAGCCTAC TTAGTACAGC AAGGAAAAAC GATTGAGCTT
AGCTGGCTTA AACGTTGGAG CAAGCGGGTA TTTAAATTTG AGTCTTGGCT GATGGCAGAT
GTGTTCCTCG TCGGGATCTT AGTTGCTATG GTGAAAATCC TGTCACTGGC TGAGGTCGGC
TTTGGCCCTT CGTTCTGGGC ATTTTGTGTT TATACCTTGT TATTAGTGAA GTTTGTTAGC
CTAGTCGATA GCTCTTGGGT ATGGGATAAA TTAACTCCCA GAGTCGTGAC ACCCTATGTG
AGGGCGGGTG AGTCGCACTT GCAACATAAT CATGCAGTGT GTGCTATCTG TGGCCAGTTA
AATGCCATCG ATACATCTGA ATGTGGCCGT TGCTCTGGGC CATTACATAA ATACTTACCC
GTATCCAGTA TGCAGGCCGC ATGGGCATTT TTGCTTGCGG CGGTCGTGTT TTATATTCCA
GCAAACTTTT ATCCCATTAT GTACACCACC AGCGTGGGGC AAACGGAGGC ATCAACCATT
ATCAGTGGTG TAGTGCTGTT ATGGCATATG GGATCCTATC CTGTTGCTTC GATTATCTTC
TTTGCCAGCA TAGTGATCCC TACGGCAAAA ATCGCCTCTT TGGCTTACTT ATTCCACCAA
GCAGGCAAAC CCCATTCACC TGAGCAAACC ATTAAAAATC AACAACTTTA CCGAGTGACT
GAATTCATTG GTCGTTGGTC TATGATTGAT ATTTTTGTGG TGGCTTTATT GACTGCATTG
GTGCAACTCA ATGAATTAAT GGCGATTAAA CCCGGCCCAG CGGCATTGTC TTTTGCCATG
GTCGTGATCT TAACCATGCT GTCAGCCATG AGCTTTGATT CTCGAGTTCT GTGGTGGCAA
ACCTTCAGCA CAAATCGATA G
|
|---|
| Protein sequence | MSQCGSSPQH EGILQACEEC GLVTPYIEPK PGYRAHCPRC QHSLQAALAT PFQPIWAYGI
ATLMMLGLSL GFPFLSFSVQ GLSQQASLWS ALISMHYASN NLLAMLILLC VVILPLIYIS
FSMFIYRQAY LVQQGKTIEL SWLKRWSKRV FKFESWLMAD VFLVGILVAM VKILSLAEVG
FGPSFWAFCV YTLLLVKFVS LVDSSWVWDK LTPRVVTPYV RAGESHLQHN HAVCAICGQL
NAIDTSECGR CSGPLHKYLP VSSMQAAWAF LLAAVVFYIP ANFYPIMYTT SVGQTEASTI
ISGVVLLWHM GSYPVASIIF FASIVIPTAK IASLAYLFHQ AGKPHSPEQT IKNQQLYRVT
EFIGRWSMID IFVVALLTAL VQLNELMAIK PGPAALSFAM VVILTMLSAM SFDSRVLWWQ
TFSTNR
|
|---|
| |