| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2103 |
|---|
| Symbol | |
|---|
| ID | 4258089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 2484225 |
|---|
| End bp | 2484986 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638122771 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_738148 |
|---|
| Protein GI | 114047598 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.985837 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAGCGTT ATTTTCACTT GCATGTCGCG GAAGATTTAC CACAGCCAAT CGAACAATGC
TTCTATCCTG ACGGCGGCAC AAGCCTGCAT TTCTATTTAC CATCACCCAG CACTGGCGAT
ACGCCTTTAG CGTATTTTTA CTCGGGACAG CAGCGGCATT ATCACAGCTT CGCACCGGGT
ACCGAACAAA TTACGGTGCG TTTTCAGCCC GGTGGCGCAT TCCATTTATT GGGTCTTGAG
CTTGCCGCTA TTCGCGTCGA TACGACAGCA AACGTTATCG ATGTGACCCA GTGGCCCATC
GTTGGTTTAA CGGCGCTCTT ATACCAACTC GTCGACACAC CACAGCCTAG CGAGCGTATC
GCCCTCGTGG AACACTGGCT ATTGCAACGA GCGAAGCAAT TAGACTTAAG CTTATCGACG
CGAATGAGTC TAGTCCCCGC AACCTTACCT CGACTCATCC ACACCCAAGC CAATTTAGAC
ACGTTTTACG GGCAACTCCC CATGAGTCGG CGCCAATTTG AACGTAAATT TAAGCAGGAA
ACGGGTTTAT CGCCCGCGCA ATTATTGCAG CTGAATCGAG TCAAAATCGC CCGCAACTTA
TTGAGCCAAT CGCCATCCCT TAGTCTCGCG CAAGTGGCAT TTGATTGTGG ATTTTACGAT
CAAGCCCACC TACACCAGCA TTTTTTGCGG GTAATGCAGC AAACACCGGG GCAATATAAA
AAACGCAAGA TGTCGCAAAT CTCCAATAAA ACGCCCGATT AA
|
|---|
| Protein sequence | MQRYFHLHVA EDLPQPIEQC FYPDGGTSLH FYLPSPSTGD TPLAYFYSGQ QRHYHSFAPG
TEQITVRFQP GGAFHLLGLE LAAIRVDTTA NVIDVTQWPI VGLTALLYQL VDTPQPSERI
ALVEHWLLQR AKQLDLSLST RMSLVPATLP RLIHTQANLD TFYGQLPMSR RQFERKFKQE
TGLSPAQLLQ LNRVKIARNL LSQSPSLSLA QVAFDCGFYD QAHLHQHFLR VMQQTPGQYK
KRKMSQISNK TPD
|
|---|
| |