| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2081 |
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| Symbol | |
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| ID | 4257246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 2455313 |
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| End bp | 2458126 |
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| Gene Length | 2814 bp |
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| Protein Length | 937 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638122749 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_738126 |
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| Protein GI | 114047576 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0379355 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0338945 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAGTTAG TGCTCCAGCT TATCGTGATC CTATGTTGCA TACTCACCAG CAACGCAGTT
AACGCCAGTC AAGGACAGAC TGAGTCACTG ATTGTGGTGA TGGGGGAAGA CAGCTTTCCC
TATCAGTTTG TCGACAACGA CGGCGAAGCC ACGGGTTTAT TAGTGGATCT GTGGAAGGAA
TGGGGCAAGC GCACCAATAC ACCATTAGTG TTTGTGGCGC GCCACTGGAA TGAGTCACTG
CAGCAATTGC AGCAGGGCAA AGCCCAAGTG CATATCGGCA TGGGACAGAC ATCTGAACGT
GAGCAGTTGT TTGATTTTGC GGAGCCTATC GCCGATGTCA GCACCTATTT ATACCTGCAT
AAATCCTTAC AAGGCAAAAA ATCCATCAAG GAACTTATTC CTTATCAAAT CGGCATTGTG
AGCGGCTCAT CCCATGAGGC GGAGCTGCGC CGTATCGAAC CAGGGTTAGT TTTCAAATAT
TATGAGAGCC GTGAAAAACT GCTAGCGGGT GTGGCGGCGG GAGAGACAGT TGTGTTTGCC
GGACTCGATG GTTATCTTCG CGATCCCGCC TCCAGTCAAG CCATTGCAGG TAGCTTTCCG
ATCAGTGCGC GTATCCCCAT CAAAGCCATG CAGTTTGTCC CCGCGGTGAT GAAAGGTAAT
CACGGCTTAG TCAAGAAGAT TAATAAAGGC TTTCAGGCGC TCGATCCGCG TTTTGTGCAA
CAAACCGAGC GGCGCTGGTT AGGCTATCAC GGGCAAAAGG CTGGCCTAGT GGTGGCCATG
CAATTGGGCG TTGAACCCTT TGTTGATCTC GGCGTTGACG GTTTGCCCCA TGGGCTTTAT
GTGGATCTAT GGCAATTATG GTCGGCAAAA ACGGGTATCA ATATCGATTT TATCCCAGGC
GACATGAATG CCACCGTCAA CGATGTGCGT CAAGGTTTAG CCGATGCGCA TATTGGTTAC
CCAGAAAGTG ACGATCTGAA AACCGGCTTA ACCCGTGCGT GGCAACTCTA TACGGTGAAG
AGTCGGCTGT TCTTATATCA ACAACAACTG ACCGATTTGC AGAGTTTAAA GGGCAAACGT
ATCGGTGTTG TGCCTACGGC ACCTTATTTA GTGGCGCTGC GTAAAGCGCT GCCCGACATT
ACTCTGCGTT ATTACGACAA TATGGATAAC ATGGTGGCGG GGGCGAGATC TGGGGAAATT
GTCGGCTTTG TGGCTGCGGG GGCATGGACT TCCCATTATT TATTGCAAAA TAAGGCCTGG
TCCGAATTTC ACCAATATCC TGAGCTTGAG TTTCCGACCG ATGTGTATGT GCTCACGCGA
AGTGACGATC CAGGCTTAAC CCAACGCATC GCTAATGGTT TTCGCAGCAT TAGCATGCAG
GAATTTGCCG AAGTTGAGCA GAAATGGATG CTGAATCCTA AAGACCGTAT TTTTAACCAG
AAGGGATTAC ATGGTACTCA GCTCTCAAGA AGCGAACAGG ATTACCTCGC ACAATTAGGT
GAAGTTAAGC TAGGTTACTT AAAACAGTGG CCACCGATGG AGTTTAACGA TGACGAGGGT
CAATTTGCGG GGATTAATAG TGATGTAAGC CATATCCTCG CCGAGCAATT GCAGATAAAT
CTTCGACCCG TTGCCTTCGA TGATTGGCAA TCGCTGATCA GTGCTTTACG CTCGGGGGAA
ATTGCGCTTG CGGGTAGTAT TGCCCAAACG GCTGAACGAC AACAATACTT AGCTTTTAGC
GAACCCTACT GGCCATCGCC GTGGGGTTTG GTGTCACAGC TTGAGCAAGT GTCGGTATTT
AATCTGGCGC AATTGGCGGG GCAAAGAGTT GCTGTGGTGG AGGGGTATCA TCTTGTGGCA
CAACTGATGG CGTTGCAGCC CTCGCTTAAG CTCGTGTTGG TGCAAGATAT CCAGTCGGGA
CTCGCTGCGG TCAATGAGGG TCATGCGGAT GTATTTATCG ACAAAGTAGT GACGCTGGCC
TCTGAGTTAA AAACGGGCCA ATATCCGCTA CTCAAAATGT CGCTACTCAG TGATTTAGCC
GATCAGCACA GCCACTTTGG ACTTAATCCG CAATATGCGC CTTTGGTTCC CTTAATCAAT
CGTGTGTTAG CACAAATAGA CCAGCATACT CAGCAACAAA TCTATTCCCA TTGGGTGAGT
TTCTCCCTTG ATTCGGACAA TAGCCGCTAT GTGCAATGGA TCCGCTATCT ATTGGTTGGT
GCGCTAAGCT TAGCGGTCGT TATGGTTGCG GTATTAATGG TGAATCGCCG CTTAAACTTG
GAGATCACTC GCCGCATTGC CGCAGAAAAA CGTTTACTGC ACGTTGCCAG CCACGATGCT
TTAACCCAGT TACCTAATCG GGCACTCTTG GATGACAGAT TGTCACAGGC TTTGTTGGCC
CATCGGCGGG ATCATAGTCA TTTTGCCTTA CTGTTTATCG ATTTAGACAA CTTTAAACAG
ATTAATGATC AATATGGTCA CCCGGTAGGA GATGCGTTGT TATTGCAAGT GGCGGGATTA
CTGACCAAAG CCATTCGTCA TTCTGATACA GTAGCAAGAT TCGGGGGAGA TGAGTTTGTG
ATCCTGCTAA ATCGTGTGCA AGATCTCGAT GCTGCCACCC AAGTTGCTGA TAATATTCTG
CACTCGCTTT CGTCACCTTT TAGCGTAGAA GGGGTGACAG TCGAGGTTGC CATCAGCATA
GGTGTGGTGA TTTATCCTCG CGATGGCGAT ACGGCCATCG ATCTATTGAA GAAAGCCGAC
CAACTGATGT ACCAAGCCAA AACAGCGGGT GGCCGCTGCT ACCGCGTGGC TTGA
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| Protein sequence | MKLVLQLIVI LCCILTSNAV NASQGQTESL IVVMGEDSFP YQFVDNDGEA TGLLVDLWKE
WGKRTNTPLV FVARHWNESL QQLQQGKAQV HIGMGQTSER EQLFDFAEPI ADVSTYLYLH
KSLQGKKSIK ELIPYQIGIV SGSSHEAELR RIEPGLVFKY YESREKLLAG VAAGETVVFA
GLDGYLRDPA SSQAIAGSFP ISARIPIKAM QFVPAVMKGN HGLVKKINKG FQALDPRFVQ
QTERRWLGYH GQKAGLVVAM QLGVEPFVDL GVDGLPHGLY VDLWQLWSAK TGINIDFIPG
DMNATVNDVR QGLADAHIGY PESDDLKTGL TRAWQLYTVK SRLFLYQQQL TDLQSLKGKR
IGVVPTAPYL VALRKALPDI TLRYYDNMDN MVAGARSGEI VGFVAAGAWT SHYLLQNKAW
SEFHQYPELE FPTDVYVLTR SDDPGLTQRI ANGFRSISMQ EFAEVEQKWM LNPKDRIFNQ
KGLHGTQLSR SEQDYLAQLG EVKLGYLKQW PPMEFNDDEG QFAGINSDVS HILAEQLQIN
LRPVAFDDWQ SLISALRSGE IALAGSIAQT AERQQYLAFS EPYWPSPWGL VSQLEQVSVF
NLAQLAGQRV AVVEGYHLVA QLMALQPSLK LVLVQDIQSG LAAVNEGHAD VFIDKVVTLA
SELKTGQYPL LKMSLLSDLA DQHSHFGLNP QYAPLVPLIN RVLAQIDQHT QQQIYSHWVS
FSLDSDNSRY VQWIRYLLVG ALSLAVVMVA VLMVNRRLNL EITRRIAAEK RLLHVASHDA
LTQLPNRALL DDRLSQALLA HRRDHSHFAL LFIDLDNFKQ INDQYGHPVG DALLLQVAGL
LTKAIRHSDT VARFGGDEFV ILLNRVQDLD AATQVADNIL HSLSSPFSVE GVTVEVAISI
GVVIYPRDGD TAIDLLKKAD QLMYQAKTAG GRCYRVA
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