| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2049 |
|---|
| Symbol | |
|---|
| ID | 4255920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2416789 |
|---|
| End bp | 2417616 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638122717 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_738094 |
|---|
| Protein GI | 114047544 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0464745 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000360099 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAATA CTACGATGTT TAATTATCAA GGTAAGAATG TTGTCGTTGT CGGTGGTACG
AGTGGAATTA ACCTCGCGAT TGCCAACGCC TTTGCGCTGG CTGGCGCGAA TGTGGCGGTG
GCGAGTCGCA GCCAAGACAA GATTGATGCC GCCGTGTTGC AGCTAAAGCA GTCAAATCCT
GATGGGATCC ACCTTGGGGT GAGTTTTGAT GTCAGGGATT TGGCTGCAGT TGAGCGGGGC
TTTGACACTA TCGCCTCCGA ATTTGGCTTT ATCGATGTGT TGGTAAGTGG CGCCGCGGGC
AACTTTCCGG CAACAGCGGC AAAACTCTCT GCTAATGGCT TTAAGGCCGT GATGGATATT
GATCTGCTGG GCAGTTTTCA AGTGCTAAAG ACGGCTTATC CTTTACTGCG TCGCCCCCAA
GGGAATATTA TTCAAATCTC GGCGCCGCAG GCATCGATAG CCATGCCAAT GCAAGCCCAT
GTGTGCGCCG CCAAAGCGGG CGTAGACATG CTCACTCGGA CATTGGCGAT AGAATGGGGC
TGTGAAGGGA TACGAATAAA CTCCATTATT CCCGGACCAA TCGCTAATAC TGAAGGATTT
AACCGTTTAG CGCCGAGCGC AGCGCTGCAA CAGCAAGTTG CACAGTCTGT ACCGTTAAAA
CGTAATGGTG AAGGGCAGGA CATTGCTAAT GCCGCGATGT TTTTAGGATC AGAGTATGCC
TCGTACATCA CAGGGGTTGT GTTACCTGTC GATGGTGGTT GGTCACTTGG CGGTGCGAGC
ATTGCAATGA CCGCATTAGG CGAGTTGGCG ACTAAAGCTC AGCAGTGA
|
|---|
| Protein sequence | MLNTTMFNYQ GKNVVVVGGT SGINLAIANA FALAGANVAV ASRSQDKIDA AVLQLKQSNP
DGIHLGVSFD VRDLAAVERG FDTIASEFGF IDVLVSGAAG NFPATAAKLS ANGFKAVMDI
DLLGSFQVLK TAYPLLRRPQ GNIIQISAPQ ASIAMPMQAH VCAAKAGVDM LTRTLAIEWG
CEGIRINSII PGPIANTEGF NRLAPSAALQ QQVAQSVPLK RNGEGQDIAN AAMFLGSEYA
SYITGVVLPV DGGWSLGGAS IAMTALGELA TKAQQ
|
|---|
| |