| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2036 |
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| Symbol | |
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| ID | 4258198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 2400313 |
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| End bp | 2403480 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638122704 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_738081 |
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| Protein GI | 114047531 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.449144 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.194235 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAGT TTTTTATTAA TCGGCCGATT TTTGCTAGCG TCATCTCCAT CGTTATCGTG
CTGCTCGGGG TGATTGCGAT GTTTAAGCTG CCCGTCGATC AGTATCCTTA CATCACGCCG
CCACAGGTGA CCATTTCGGC CTCTTATCCG GGCGCCAGTT CTACTACGGC CGCCGAGTCA
GTTGCAACAC CGCTCGAGCA AGAAGTGAAC GGTGTGCCCA ATATGATTTA TATGAGTTCA
AAGAGTACGA ACTCGGGCAG CACCAGTGTG ACCATTACCT TCGATGTGGG TACTAATGCG
GACTTGGCGG CGGTAGATGT GCAAAACTCC GCTCAACAAG CTTCGGGTGG ACTGCCAATC
GACGTGCAAA CCGAAGGGGT GACTGTCTCT AAAGATGCGT CGGTGGAATT ACTAAAACTG
GCGTTAACCT CGGACGATGA AAGGTTCGAT GAAATTTACC TGAGTAATTA CGCCACCATC
AATATCGAAT CGGCGCTCAG GCGGATCCCC GGTGTGGGCC GCACCCGTAA CACGGGTTCA
CGCAGTTATG CGATGCGGAT TTGGTTAAAA CCCGATGCCA TGGCGGGGTA CAGCTTAACC
ACCACAGATG TGATCAACGC CATCAAGGCA CAAAATAAAG AATCCCCTGC AGGCACCATT
GGTACTCAAC CCAATAATGA CGATATAAGT TTAACCTTGC CCATCAGTGT GGCGGGCAGA
TTAAGCTCGG TGCAGGCATT TAATGAGATC ATAGTGCGCG CCAATCCCGA CGGCTCGATT
ATACGGCTGC GGGATATTGC CGGCGTAGAA CTCGGCTCCT CTGCCTATAC GTTGCAATCC
CAGTTAAATG GTGAAAATGC CACCATCTTG CAGGTGTACT TACTCCCTGG CGCCAATGCT
CTTGAGGTCA CCCATAAGGT GAAACAGGCG ATGGCGGAAC TGTCGCAAAA GTTTCCCCAA
GGGATGAAAT GGGAAGTATT TTATGACGCA TCCATCTTTA TTCAGGAATC CATCGATGAG
GTGATCCACA CCCTCATCGA GGCCTTGGTG CTTGTGGTGT TGGTGGTGTA TTTGTTCCTG
CAAAATGTGC GCGCGACTTT GATCCCCGCC ATTGCGGTAC CAGTCTCCTT GATAGGCACC
TTGGCGGCCA TGCTGGCCTT TGGTTTTACC ATTAATACTG TGAGTTTACT CGCGCTGGTT
CTCGCCATTG GGATTGTGGT CGACGATGCC ATTGTGGTGG TCGAAAACGT CGAGCGTTTA
ATTCACGAGA AAGGCATGAG CGCCATCGAT GCGACTCGGA TTGCGATGAA AGAATTGTCG
GGTGCACTGG TTGCCACCAG TTTAGTGCTC TGCGCGGTAT TCGTCCCCGT GTCATTCTTA
GCGGGGATCA CAGGCATCAT GTACCGCGAG TTTGCGGTGG CAATTACGGT TGCCGTGTTG
ATTTCTACTC TAGTGGCGTT GACCCTAAGT CCCGCACTCT GCGCCTTACT ATTAAAACCG
AGTAAGGCAC CACAGCGGGG ATTCTTTCAC TGGCTGAATC GCAAACTCGA CTTGGGGACC
AATCAATATG TTGGCTTAGT CGCCTTAACC AATAAATACG CCAAACGCAG TTACTTAGCT
TTTGCAATTA TGTTTGGTGG TACCTATTTC ATCATGTCCC ACTTACCGAG CAGCTTTATG
CCCGACGAGG ACCAAGGTCG ATTCTTTATC GATATGACAT TACCCGATGG CTCTACGGTT
AATCGTACCG AGGCGATTTT AAAGAAAGCC GAGCAATATG TGCGCGCCAA TCCCGCTGTT
GCCTATTCAT TTACGCTGGC GGGGGAAAAC CGCCGCTCAG GGTCGAATCA GGCCAATGGT
CAATTTGAAG TGGTACTCAA GCCTTGGGCC GAGCGCGAGG CAACCCATGC CACAGTACAA
TCAGTCATGA AGGCAATAGA TAAGGATTTG AAAAACGTAC TTGAGGCCGA GTTTAATCTT
TATCTGCCAT CGGCGGTGCC GGGCCTAGGC AATGGCTCAG GGGTGGAAAT GCAGCTTCAA
GATACCTCTG GTACACGTTT CCAAGGTTTG GTCGAAACCG CTAACGAATT AGTCGAGCAG
CTAAAGCTGC AGCCTGAAGT TGCCAGTGCC AGCGTGTCGC TGCAGAGCGC AATCCCGCAA
TTGCATTTGA CGGTCGATGA GGCAAAGGCG ATGGCGATTG GGGTGAATGT GAGTGATATT
TACAGCACAA TTAAAACCTT AACCGACTCA TCAACCGTGA ATGACTTTAA CCTCTTTGGC
CGGGTGTATC GGGTGAAGAT CCAAGCGGAA GAGAGTTACC GTCAATTCCC GCATCAAATC
AAAGATTATT ATGTGCGTTC ATCGAGCGGC GCTATGGTGC CGATTGGTGT GCTGGCTAAA
TATGATTACA CGGTGGGGCC GTCTTCAGTG ACCCATTACA ATTTATTCTC CAGCGCCTCC
ATCAATGTGA CGCCCGCAAC GGGCTACGCC ACTGGCGATG TTATTCAAGC CATCGAGCGG
GTTGCAACGC CGATCCTGCC CGATGAGTTT AAATACGAAT GGACTGGCAT CACCTACCAA
GAAGTCCAGT CTGCGAATCA AACTGGCATT GCCATTGGAT TAGCGCTGTT ATTTGTGTTT
CTGTTTTTAG CTGCGCTCTA TGAGAGTTGG AGTATTCCTG TTGCCGTATT ACTCATCGCG
CCTATCGCAC TCTTAGGCGC GGCGGTCACG ACCTTAATCA GTGGCATGCA GAGTAACTTA
TTCTTCCAAG TGGCGTTTAT TGCGTTAATC GGCATGGCGG CGAAGAATGC GATTTTGATT
GTCGAGTTTG CCAATCAGTT GCACCAACAG GGCAAGACGC ACATTTCTGC GGCGCTCGAA
GCTGCGACCA TGCGCTTTCG GCCGATTTTA ATGACTTCCA TGGCCTTCAT TTTGGGCGTA
TTACCGCTAG TGTTATCCGA GGGGCCTGGG GCGGTGAGTC GACAATCAAT TTCGTTACCC
ATTCTGGGTG GTATGGTGTT GGCAACCACC ATAGGTATTG TATTTGTACC GCTGTTCTTT
GTGACGACAG CGGGCTGGGT AAAAAAGAAT GTCGTTAAAC AACCCATTAA AACAAAAGAG
GAATTACTCC TAGACCAAGA AACTGTCGAG GAGGTGAACC GTGGTTAA
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| Protein sequence | MAQFFINRPI FASVISIVIV LLGVIAMFKL PVDQYPYITP PQVTISASYP GASSTTAAES
VATPLEQEVN GVPNMIYMSS KSTNSGSTSV TITFDVGTNA DLAAVDVQNS AQQASGGLPI
DVQTEGVTVS KDASVELLKL ALTSDDERFD EIYLSNYATI NIESALRRIP GVGRTRNTGS
RSYAMRIWLK PDAMAGYSLT TTDVINAIKA QNKESPAGTI GTQPNNDDIS LTLPISVAGR
LSSVQAFNEI IVRANPDGSI IRLRDIAGVE LGSSAYTLQS QLNGENATIL QVYLLPGANA
LEVTHKVKQA MAELSQKFPQ GMKWEVFYDA SIFIQESIDE VIHTLIEALV LVVLVVYLFL
QNVRATLIPA IAVPVSLIGT LAAMLAFGFT INTVSLLALV LAIGIVVDDA IVVVENVERL
IHEKGMSAID ATRIAMKELS GALVATSLVL CAVFVPVSFL AGITGIMYRE FAVAITVAVL
ISTLVALTLS PALCALLLKP SKAPQRGFFH WLNRKLDLGT NQYVGLVALT NKYAKRSYLA
FAIMFGGTYF IMSHLPSSFM PDEDQGRFFI DMTLPDGSTV NRTEAILKKA EQYVRANPAV
AYSFTLAGEN RRSGSNQANG QFEVVLKPWA EREATHATVQ SVMKAIDKDL KNVLEAEFNL
YLPSAVPGLG NGSGVEMQLQ DTSGTRFQGL VETANELVEQ LKLQPEVASA SVSLQSAIPQ
LHLTVDEAKA MAIGVNVSDI YSTIKTLTDS STVNDFNLFG RVYRVKIQAE ESYRQFPHQI
KDYYVRSSSG AMVPIGVLAK YDYTVGPSSV THYNLFSSAS INVTPATGYA TGDVIQAIER
VATPILPDEF KYEWTGITYQ EVQSANQTGI AIGLALLFVF LFLAALYESW SIPVAVLLIA
PIALLGAAVT TLISGMQSNL FFQVAFIALI GMAAKNAILI VEFANQLHQQ GKTHISAALE
AATMRFRPIL MTSMAFILGV LPLVLSEGPG AVSRQSISLP ILGGMVLATT IGIVFVPLFF
VTTAGWVKKN VVKQPIKTKE ELLLDQETVE EVNRG
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