| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2018 |
|---|
| Symbol | rplT |
|---|
| ID | 4258618 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2380810 |
|---|
| End bp | 2381166 |
|---|
| Gene Length | 357 bp |
|---|
| Protein Length | 118 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638122685 |
|---|
| Product | 50S ribosomal protein L20 |
|---|
| Protein accession | YP_738064 |
|---|
| Protein GI | 114047514 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0292] Ribosomal protein L20 |
|---|
| TIGRFAM ID | [TIGR01032] ribosomal protein L20 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000148558 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0497188 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGAG TTAAGCGTGG TGTAACCGCA CGTGCTCGTC ACAAGAAAGT TTTAAAATTA
GCTAAAGGTT ATTATGGCGC TCGTAGCCGT ACTTACCGCG TTGCTGTTCA AGCAGTAACT
AAAGCTGGTC AATATGCTTA CCGTGACCGT CGTCAGAAAA AACGTCAATT CCGTCAACTG
TGGATTGCAC GTATTAATGC TGCAGCTCGT CAAAATGGTC TGTCTTACAG CCGTTTCATC
AACGGTCTGA AAAAGGCGTC TATCGAAATC GATCGTAAGA TTTTGGCTGA CATCGCTGTA
TTCGACAAAG TTGTATTCGC AACTTTAGTT GAAAAAGCAA AAGAAGCGTT AAACTAA
|
|---|
| Protein sequence | MPRVKRGVTA RARHKKVLKL AKGYYGARSR TYRVAVQAVT KAGQYAYRDR RQKKRQFRQL
WIARINAAAR QNGLSYSRFI NGLKKASIEI DRKILADIAV FDKVVFATLV EKAKEALN
|
|---|
| |