Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2009 |
Symbol | |
ID | 4258695 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 2370574 |
End bp | 2371860 |
Gene Length | 1287 bp |
Protein Length | 428 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638122676 |
Product | seryl-tRNA synthetase |
Protein accession | YP_738055 |
Protein GI | 114047505 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0172] Seryl-tRNA synthetase |
TIGRFAM ID | [TIGR00414] seryl-tRNA synthetase |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000634653 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000399612 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTAGATC CTAAATTTTT GCGCAACGAA TTAGCAGTTA CCGCTGAGCG ATTAGCTACC CGTGGTTTTA TTTTAGATGT CGCTCATCTC ACTCAATTAG AAGAAAAACG TAAGTCACTG CAAGTGGCGA CTGAAGAGTT ACAAGCTTCG CGTAATGCTA TTTCCAAGTC CATCGGACAA GCAAAAGCCC GCGGCGAAGA TGTGGATGCC ATCATGGCGC AGGTTGGCGA TTTAGGTGCG CAATTAGATG CGAAGAAAGT CGAGCTGGCT GCGGTACTTG AAGAAGTGAA CGCGATTGCC ATGTCGATGC CAAACCTGCC GGATGAGTCT GCGCCTATCG GTGCTGACGA GACTGAAAAC GTCGAAATCC GTCGTTGGGG CACACCACGC AGCTTCGATT TTCCTGTTAA AGATCATATC GACTTAGGTG AAGGCCTAAA CGGTTTAGAT TTTAAGAGCG CCGTGAAAAT CACTGGCTCA CGCTTTATCG TCATGAAAGG CCAAATCGCC CGTTTAAACC GCGCATTAGG TCAGTTCATG TTAGATCTGC ACACTACTGA GCACGGTTAT ACCGAAGCTT ACGTGCCATT ACTGGTTAAC GAAGCAAGCT TACTGGGTAC TGGCCAATTG CCTAAGTTTG GTGAAGATTT GTTCCACACT AAACCTGCGA CCGAAGAAGG CCAAGGTTTA AGCCTGATCC CAACCGCTGA AGTGCCATTA ACGAACTTAG TGCGTGACAG CATTGTCGAT GAAGACGAAT TACCGATTAA GTTAACCGCG CATACCGCCT GTTTCCGCAG TGAAGCTGGC TCATACGGTA AAGATACCCG TGGTCTTATC CGTCAGCACC AATTCGATAA AGTGGAATTA GTGCAACTGG TTAAGCCAGA AGACTCAATG GCGGCGCTCG AAGCATTAAC GGGCCACGCT GAAACCGTAC TGCAACGCCT CGGTCTGCCA TACCGCACAG TGATCCTGTG TACCGGTGAT ATGGGCTTTG GTTCAAGCAA AACCTACGAT ATCGAAGTGT GGTTACCAGG CCAAAACACT TACCGCGAGA TTTCTTCATG TTCAAACATG AAAGACTTCC AAGCCCGTCG TATGCAAGCC CGTTACCGCG TTAAGGCCGA TAACAAGCCA GCCTTGCTGC ACACCTTAAA CGGCTCAGGC CTAGCGGTAG GTCGTACTTT AGTTGCGATT TTAGAGAACT ATCAAAATGC CGATGGTAGC GTGACCATTC CAGAAGCTCT GCGTCCATAC ATGGGCGGAC TGACTCAGAT CGGTTAA
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Protein sequence | MLDPKFLRNE LAVTAERLAT RGFILDVAHL TQLEEKRKSL QVATEELQAS RNAISKSIGQ AKARGEDVDA IMAQVGDLGA QLDAKKVELA AVLEEVNAIA MSMPNLPDES APIGADETEN VEIRRWGTPR SFDFPVKDHI DLGEGLNGLD FKSAVKITGS RFIVMKGQIA RLNRALGQFM LDLHTTEHGY TEAYVPLLVN EASLLGTGQL PKFGEDLFHT KPATEEGQGL SLIPTAEVPL TNLVRDSIVD EDELPIKLTA HTACFRSEAG SYGKDTRGLI RQHQFDKVEL VQLVKPEDSM AALEALTGHA ETVLQRLGLP YRTVILCTGD MGFGSSKTYD IEVWLPGQNT YREISSCSNM KDFQARRMQA RYRVKADNKP ALLHTLNGSG LAVGRTLVAI LENYQNADGS VTIPEALRPY MGGLTQIG
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