| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1988 |
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| Symbol | |
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| ID | 4256616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 2351507 |
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| End bp | 2352448 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638122654 |
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| Product | periplasmic binding protein/LacI transcriptional regulator |
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| Protein accession | YP_738034 |
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| Protein GI | 114047484 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.188386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000242477 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACATA ATAAAATCAT TACCGCATTG GGATTATGGG CTGTCAGTGC AACTTGTGCC
TACGCCACCA CGGTGGGCTT TTCACAGGTT GGCTCCGAGA GTGGTTGGCG CACCAGCTTT
AGCGAAGCGG TCAAGGCCGA AGCCAAACAG CGTGGCATCG ATTTAAAATT TGCCGACGCT
CAGCAAAAAC AAGAGAACCA AATCAAAGCA GTGCGTAGCT TTATCGCCCA AGGCGTGGAT
GCCATTATTA TCGCACCCGT GGTAGAAACA GGCTGGAAAC CCGTACTCAA AGAAGCCAAA
CGTGCCCACA TTCCTGTGGT GATTGTCGAC CGTAATATCA AGGTCGATGA TGACTCCTTA
TTCCTTACCC GTATCGCCTC CGACTTTACC GAAGAAGGCC GCAAGATTGG CCAATGGCTA
ATGGATAAAA CCCAAGGCAA CTGTGATATC GCCGAGTTGC AGGGCACGGT AGGTGCAACC
GCAGCGATTG ATCGCGCCGC CGGTTTTAAC CAAGTGATTG CCAATTATCC CAATGCCAAG
ATTGTTCGTA GCCAAACAGG CGAATTTACC CGCGCTAAGG GTAAAGAAGT GATGGAAGGT
TTCCTCAAGG CGCAAAACGG TCAGCCACTG TGCGCCGTGT GGTCGCATAA CGATGAAATG
GCCCTTGGCG CCGTGCAAGC CATTAAAGAA GCGGGTTTAA AACCGGGCAA AGATATTCTG
ATTGTCTCCG TGGATGGTGT TCCCGATTAC TTTAAGGCCA TGGCCGATGG TGATGTTAAT
GCCACGGTTG AGCTTAGCCC ATACTTAGGC GGCCCAGCAT TTGATGCTAT CGATGCGTAC
CTGAAGGGCA ATAAGGATCA AGCCAAGCTT ATTAGCACCA CGGGTGATGT ATTTACCCAA
GAAACCGCTG CCGCAGAGTA CGAAAAGCGC CGCCAGCAAT AA
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| Protein sequence | MKHNKIITAL GLWAVSATCA YATTVGFSQV GSESGWRTSF SEAVKAEAKQ RGIDLKFADA
QQKQENQIKA VRSFIAQGVD AIIIAPVVET GWKPVLKEAK RAHIPVVIVD RNIKVDDDSL
FLTRIASDFT EEGRKIGQWL MDKTQGNCDI AELQGTVGAT AAIDRAAGFN QVIANYPNAK
IVRSQTGEFT RAKGKEVMEG FLKAQNGQPL CAVWSHNDEM ALGAVQAIKE AGLKPGKDIL
IVSVDGVPDY FKAMADGDVN ATVELSPYLG GPAFDAIDAY LKGNKDQAKL ISTTGDVFTQ
ETAAAEYEKR RQQ
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