| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1986 |
|---|
| Symbol | |
|---|
| ID | 4256614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2348758 |
|---|
| End bp | 2349975 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638122652 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_738032 |
|---|
| Protein GI | 114047482 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.422562 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000308121 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGCT CAGCCGAAAC CCTATCATCC ACAAGCTTGT CCGCCGATTT GCTCTCACCC
CAGATGAACG CATCTGAGGC GCATTCATCT GAGCGGCAAC CGCGGATGCA GGAAAGTCAT
AAGACCATGG TTCAAGAAAA AAACGCCCGT TACCAAGCGG GCAAGTCGAC CTCCATTGGT
CGATACCTCT GGCCACTATT GGCCTTAACT ATTCTGTTAC TGGCCAATCT GTTTATTGAC
AGCAGTTTCT TCAATATCAG CTATCAAGAC GACAGACTCT ATGGCTCCTT GATTGATATC
TTAAATCGCA GTGCACCCGT GGCGCTGCTC TCCATTGGTA TGAGTCTCGT GATTGCCACT
GGCGGAATCG ACCTGTCGGT TGGTGCCGTG ATGGCGATTG CAGGCGCAGT ATGCGCCAAT
CTACTGTTAG TGCCGGATAT CAGCTTAGTC ACCGTTATTG CGGCAGGCTT GATCGTTGGG
CTCTTAGCTG GCTGTATTAA TGGCGGTCTG GTGAGTTTCT TAGGTATTCA ACCGATTGTC
GCGACCTTAC TGCTCATGGT GGCGGGGCGC GGTGTTGCTC AGCTTATCAA CCAAGGACAA
ATTATCACTT TCCAGCACCC AGGCTTTGCC GCCATTGGCG TGGGCCAGTT TTTAGGCCTG
CCGATGCCAG TGTGGATTGT GATTGGGATG CTAACCTTCA GCCAATTACT GCTGCGTAAA
ACCGCTTTAG GGCTTTTTAT CGAAGCGGTT GGCTGTAATG CCAAGGCGAG TCGTTACCTC
GGGATCAACG ATAAATCCAT CAAACTGTTC GCCTATGGCA TTGCGGGTCT GTGCGCGGCA
TTGGCCGGCA TGATCAGCAC CGCCGATATC CAAGGCTCAG ATGCGAATAA CGCCGGGCTT
TGGCTTGAGC TCGATGCCGT GCTCGCCGTC GTGATTGGCG GCGCTGCGCT CACGGGAGGG
CGTTTCTCGT TAATTTTGTC GGTCGTCGGC GCGCTGATCA TTCAAACCTT AGCGACCACC
ATTATCGTCA GTGGTTTACC CGCTAAATTT AACTTGCTGA TCAAGGCCAT CGTTATCCTG
ACCGTACTGC TGTTGCAATC GGCTAAATTT AGGCGCCAAT TGTCGGCGCT GTTCACATCC
AAGCGCCAAA CGGATGCCAA ACCAGCAGAA AAGGGCACAA GTGCAAAAGC CAGTACAGCA
ACAGGAGAAA AACTATGA
|
|---|
| Protein sequence | MKSSAETLSS TSLSADLLSP QMNASEAHSS ERQPRMQESH KTMVQEKNAR YQAGKSTSIG
RYLWPLLALT ILLLANLFID SSFFNISYQD DRLYGSLIDI LNRSAPVALL SIGMSLVIAT
GGIDLSVGAV MAIAGAVCAN LLLVPDISLV TVIAAGLIVG LLAGCINGGL VSFLGIQPIV
ATLLLMVAGR GVAQLINQGQ IITFQHPGFA AIGVGQFLGL PMPVWIVIGM LTFSQLLLRK
TALGLFIEAV GCNAKASRYL GINDKSIKLF AYGIAGLCAA LAGMISTADI QGSDANNAGL
WLELDAVLAV VIGGAALTGG RFSLILSVVG ALIIQTLATT IIVSGLPAKF NLLIKAIVIL
TVLLLQSAKF RRQLSALFTS KRQTDAKPAE KGTSAKASTA TGEKL
|
|---|
| |