Gene Shewmr7_1952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_1952 
Symbol 
ID4258377 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand- 
Start bp2304461 
End bp2305471 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content45% 
IMG OID638122615 
Productglyceraldehyde-3-phosphate dehydrogenase 
Protein accessionYP_737998 
Protein GI114047448 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones0 
Plasmid unclonability p-value0.00000203454 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones2 
Fosmid unclonability p-value0.00256739 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTATCC GTGTAGCAAT AAATGGTTAT GGCCGTATCG GTAGAAACGT ATTACGCGCC 
CTGTATGAAA GCGAAAAAGC TTACCCAATC AAAATTGTTG CCATCAACGA TTTAGGCGAC 
GCTTCAATCA ACGCTCACCT GACAAAATAC GATTCTGTAC ATGGTCGTTT CAATGCCAAA 
GTTGAGCATG ATGCTGAAGC AATTTATGTC AACGGCGACA AGATCCTCAC CTTCCAAGAA 
CGCGATCCAG GTAAATTACC TTGGGGCGAC CTACAAGTTG ACGTCGTGTT TGAATGTACT 
GGTATCTTCA CTTCTAAAGA GTCTGTACAG CCACATTTAG CGGCGGGCGC GAAGAAAGTC 
ATTATCTCTG CACCTGGTAA AAACGTTGAT GCAACCGTCG TTTACGGTGT GAACAACAAC 
GTGTTGACCG CGGATATGAC TGTTATCTCT AACGCTTCAT GTACCACTAA CTGTTTAGCG 
CCTTTCGCTA AGCCGTTAAA TGACGAAATT GGTATCGAAT CCGGTCTGAT GACCACCATT 
CATGCTTACA CCAACGATCA ACGTTTATCT GACGTATACC ACACAGATTT ACGCCGTGCC 
CGCGCTGCAG CACTGTCAAT GATCCCAACT AAAACTGGCG CTGCTGCGGC AGTAGGTTTA 
GTTGTACCTG AATTACAAGG TAAATTTGAT GGTTTAGCAG TACGTGTACC GACTGTTAAC 
GTGTCTTTAG TGGATTTATC TTTCATTGCT GCACGTGATA CTACTGTTGA AGAAGTTAAC 
GCCATCATCG AACGTGCTGC AGCTGTTGCA CCACTGAGCG AAGTGTTAGC GGTAAACAAA 
GAGCCACTGG TTTCTATCGA CTTTAACCAC AACGCCTTTT CATCTAACTT CGATGCGACA 
CAAACCCGCG TTAACGGCCG TTTAGTCAAA GTGATGGCAT GGTACGATAA CGAATGGGGC 
TTCAGTAACC GTATGTTAGA TAACGCGGTT GCGCTGATGA ACGCGAAGTA A
 
Protein sequence
MTIRVAINGY GRIGRNVLRA LYESEKAYPI KIVAINDLGD ASINAHLTKY DSVHGRFNAK 
VEHDAEAIYV NGDKILTFQE RDPGKLPWGD LQVDVVFECT GIFTSKESVQ PHLAAGAKKV 
IISAPGKNVD ATVVYGVNNN VLTADMTVIS NASCTTNCLA PFAKPLNDEI GIESGLMTTI 
HAYTNDQRLS DVYHTDLRRA RAAALSMIPT KTGAAAAVGL VVPELQGKFD GLAVRVPTVN 
VSLVDLSFIA ARDTTVEEVN AIIERAAAVA PLSEVLAVNK EPLVSIDFNH NAFSSNFDAT 
QTRVNGRLVK VMAWYDNEWG FSNRMLDNAV ALMNAK