Gene Shewmr7_1924 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_1924 
Symbol 
ID4258452 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp2271601 
End bp2273463 
Gene Length1863 bp 
Protein Length620 aa 
Translation table11 
GC content50% 
IMG OID638122587 
Productpeptidyl-dipeptidase A 
Protein accessionYP_737970 
Protein GI114047420 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1164] Oligoendopeptidase F 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000467858 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTATTC TATTGAATCG TCCCACCACT CTCGCGCTCA CCATAGCACT AACCTTAGGC 
TTAACCGCCT GTAATGATGC CCAAAGCAAA GCAGAGGCCA CAACCGCTGC ACCTGCTGCA
ACTAAAACCG CGCCCGATAA AGCTCAGGCC ATCGCCTTTA TTCAAGATGC GGAAACCCAC
ATGGCGCAGC TTTCTATCGA AGCGAATCGC GCCGAATGGA TTTACAGTAA CTTTATCACC
GAAGATACTG CAGCCTTATC TGCCTCTGTG GGTGAAAAAG TCAGTGCCGC GTCGGTCAAA
TTCGCTACCG AAGCTGCCAA ATACGCCAAT GTAGAACTCG ATCCCGCCAA TGCGCGCAAA
CTGAATATTC TGCGCAGCGC ACTCGTGTTA CCTGCGCCAC TGGATCCCGC CAAAAATGCT
GAGCTGGCGC AAATCAGCTC CGAGCTCAAT GGACTGTATG GTAAAGGCAA ATACTGTTTC
GCCGATGGCA AGTGTATGAC CCAGCCAGAG CTATCGAGCC TGATGGCCGA ATCGCGTGAC
CCAGCCAAAC TGCTTGAGGC ATGGAAAGGT TGGCGTGAAA TTGCAAAACC GATGCGCCCT
CTTTTTCAAC GTGAAGTTGA ACTCGCCAAC GAAGGTGCAA AAGACCTAGG TTACGCTAAC
CTCTCTGAGT TATGGCGCAG CCAATACGAT ATGAAACCCG ATGAGTTTTC ACAGGAATTA
GACCGTTTAT GGGGACAAGT TATGCCTCTC TACGAATCCC TGCATTGTTA TGTTCGCGGC
GAGCTGAATA ACGAATACGG TGACGCCATT GCGCCAAAAA CCGGCCCTAT TCCCGCACAC
TTACTGGGAA ATATGTGGGC ACAACAATGG GGTAATGTGT ACGATCTCGT CGCCCCTGAC
GATGCCGATC CTGGCTATGA TGTGACGGAA TTGCTCGAGC AGAAAGGCTA TGATGAGCAC
AAAATGGTTA AACAGGCCGA AAGCTTTTTC ACCTCGTTAG GCTTTGCGCC ACTGCCAGAC
AGTTTTTGGA GTCGCTCTTT ATTCTTGCAA CCCAAGGATC GTGATGTCGT TTGTCATGCC
TCGGCGTGGG ATTTGGATAA CCTCGACGAT ATTCGCATCA AGATGTGTAT CCAGAAAACC
GCTGAAGACT TCACCGTTAT TCACCACGAA CTTGGGCACA ACTTCTATCA ACGTGCCTAT
AAACAGCAGC CTTTCCTGTT TAAAAACAGT GCCAATGATG GTTTCCATGA GGCCATTGGT
GACACGATCG CGCTATCAAT TACCCCAAGC TATCTAAAAC AGATTGGCTT GCTCGAAGAC
GTGCCCGATG CTTCCAAGGA TATTGGCTTA CTGCTGAAAC AAGCTCTGGA TAAAATCGCC
TTCCTACCCT TTGGTTTGAT GATTGACCAG TGGCGCTGGA AAGTCTTTAG CGGTGAAATC
ACTCCAGCGC AGTATAACCA AGCCTGGTGG GAATTAAGAG AGAAATACCA AGGCGTTAAG
GCGCCGACAG ACCGCACTGA AGCCGATTTT GACCCAGGTG CCAAGTACCA TGTGCCCGGT
AACGTGCCTT ATACGCGCTA CTTCCTCGCG CATATCCTGC AATTCCAGTT CCATAAGGCA
CTGTGTGATA CCGCCGGCGA TAAAGGACCT GTACATAGAT GCAGTATTTA TGGCAATCAA
GCCGCAGGGG AAAAACTCAA TAAAATGTTA GAGCTGGGTG CAAGCCAACC TTGGCCAGTT
GCTTTAAAAG AAGTGACAGG TACTGAGGGA ATGGATGCCA AAGCCGTACT CGATTATTTT
GCGCCGCTTA AAACCTGGCT CGATGAGCAA AACACGGCGG CGAATCGCCA ATGTGGTTGG
TAA
 
Protein sequence
MAILLNRPTT LALTIALTLG LTACNDAQSK AEATTAAPAA TKTAPDKAQA IAFIQDAETH 
MAQLSIEANR AEWIYSNFIT EDTAALSASV GEKVSAASVK FATEAAKYAN VELDPANARK
LNILRSALVL PAPLDPAKNA ELAQISSELN GLYGKGKYCF ADGKCMTQPE LSSLMAESRD
PAKLLEAWKG WREIAKPMRP LFQREVELAN EGAKDLGYAN LSELWRSQYD MKPDEFSQEL
DRLWGQVMPL YESLHCYVRG ELNNEYGDAI APKTGPIPAH LLGNMWAQQW GNVYDLVAPD
DADPGYDVTE LLEQKGYDEH KMVKQAESFF TSLGFAPLPD SFWSRSLFLQ PKDRDVVCHA
SAWDLDNLDD IRIKMCIQKT AEDFTVIHHE LGHNFYQRAY KQQPFLFKNS ANDGFHEAIG
DTIALSITPS YLKQIGLLED VPDASKDIGL LLKQALDKIA FLPFGLMIDQ WRWKVFSGEI
TPAQYNQAWW ELREKYQGVK APTDRTEADF DPGAKYHVPG NVPYTRYFLA HILQFQFHKA
LCDTAGDKGP VHRCSIYGNQ AAGEKLNKML ELGASQPWPV ALKEVTGTEG MDAKAVLDYF
APLKTWLDEQ NTAANRQCGW