Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1924 |
Symbol | |
ID | 4258452 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 2271601 |
End bp | 2273463 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638122587 |
Product | peptidyl-dipeptidase A |
Protein accession | YP_737970 |
Protein GI | 114047420 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1164] Oligoendopeptidase F |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000467858 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTATTC TATTGAATCG TCCCACCACT CTCGCGCTCA CCATAGCACT AACCTTAGGC TTAACCGCCT GTAATGATGC CCAAAGCAAA GCAGAGGCCA CAACCGCTGC ACCTGCTGCA ACTAAAACCG CGCCCGATAA AGCTCAGGCC ATCGCCTTTA TTCAAGATGC GGAAACCCAC ATGGCGCAGC TTTCTATCGA AGCGAATCGC GCCGAATGGA TTTACAGTAA CTTTATCACC GAAGATACTG CAGCCTTATC TGCCTCTGTG GGTGAAAAAG TCAGTGCCGC GTCGGTCAAA TTCGCTACCG AAGCTGCCAA ATACGCCAAT GTAGAACTCG ATCCCGCCAA TGCGCGCAAA CTGAATATTC TGCGCAGCGC ACTCGTGTTA CCTGCGCCAC TGGATCCCGC CAAAAATGCT GAGCTGGCGC AAATCAGCTC CGAGCTCAAT GGACTGTATG GTAAAGGCAA ATACTGTTTC GCCGATGGCA AGTGTATGAC CCAGCCAGAG CTATCGAGCC TGATGGCCGA ATCGCGTGAC CCAGCCAAAC TGCTTGAGGC ATGGAAAGGT TGGCGTGAAA TTGCAAAACC GATGCGCCCT CTTTTTCAAC GTGAAGTTGA ACTCGCCAAC GAAGGTGCAA AAGACCTAGG TTACGCTAAC CTCTCTGAGT TATGGCGCAG CCAATACGAT ATGAAACCCG ATGAGTTTTC ACAGGAATTA GACCGTTTAT GGGGACAAGT TATGCCTCTC TACGAATCCC TGCATTGTTA TGTTCGCGGC GAGCTGAATA ACGAATACGG TGACGCCATT GCGCCAAAAA CCGGCCCTAT TCCCGCACAC TTACTGGGAA ATATGTGGGC ACAACAATGG GGTAATGTGT ACGATCTCGT CGCCCCTGAC GATGCCGATC CTGGCTATGA TGTGACGGAA TTGCTCGAGC AGAAAGGCTA TGATGAGCAC AAAATGGTTA AACAGGCCGA AAGCTTTTTC ACCTCGTTAG GCTTTGCGCC ACTGCCAGAC AGTTTTTGGA GTCGCTCTTT ATTCTTGCAA CCCAAGGATC GTGATGTCGT TTGTCATGCC TCGGCGTGGG ATTTGGATAA CCTCGACGAT ATTCGCATCA AGATGTGTAT CCAGAAAACC GCTGAAGACT TCACCGTTAT TCACCACGAA CTTGGGCACA ACTTCTATCA ACGTGCCTAT AAACAGCAGC CTTTCCTGTT TAAAAACAGT GCCAATGATG GTTTCCATGA GGCCATTGGT GACACGATCG CGCTATCAAT TACCCCAAGC TATCTAAAAC AGATTGGCTT GCTCGAAGAC GTGCCCGATG CTTCCAAGGA TATTGGCTTA CTGCTGAAAC AAGCTCTGGA TAAAATCGCC TTCCTACCCT TTGGTTTGAT GATTGACCAG TGGCGCTGGA AAGTCTTTAG CGGTGAAATC ACTCCAGCGC AGTATAACCA AGCCTGGTGG GAATTAAGAG AGAAATACCA AGGCGTTAAG GCGCCGACAG ACCGCACTGA AGCCGATTTT GACCCAGGTG CCAAGTACCA TGTGCCCGGT AACGTGCCTT ATACGCGCTA CTTCCTCGCG CATATCCTGC AATTCCAGTT CCATAAGGCA CTGTGTGATA CCGCCGGCGA TAAAGGACCT GTACATAGAT GCAGTATTTA TGGCAATCAA GCCGCAGGGG AAAAACTCAA TAAAATGTTA GAGCTGGGTG CAAGCCAACC TTGGCCAGTT GCTTTAAAAG AAGTGACAGG TACTGAGGGA ATGGATGCCA AAGCCGTACT CGATTATTTT GCGCCGCTTA AAACCTGGCT CGATGAGCAA AACACGGCGG CGAATCGCCA ATGTGGTTGG TAA
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Protein sequence | MAILLNRPTT LALTIALTLG LTACNDAQSK AEATTAAPAA TKTAPDKAQA IAFIQDAETH MAQLSIEANR AEWIYSNFIT EDTAALSASV GEKVSAASVK FATEAAKYAN VELDPANARK LNILRSALVL PAPLDPAKNA ELAQISSELN GLYGKGKYCF ADGKCMTQPE LSSLMAESRD PAKLLEAWKG WREIAKPMRP LFQREVELAN EGAKDLGYAN LSELWRSQYD MKPDEFSQEL DRLWGQVMPL YESLHCYVRG ELNNEYGDAI APKTGPIPAH LLGNMWAQQW GNVYDLVAPD DADPGYDVTE LLEQKGYDEH KMVKQAESFF TSLGFAPLPD SFWSRSLFLQ PKDRDVVCHA SAWDLDNLDD IRIKMCIQKT AEDFTVIHHE LGHNFYQRAY KQQPFLFKNS ANDGFHEAIG DTIALSITPS YLKQIGLLED VPDASKDIGL LLKQALDKIA FLPFGLMIDQ WRWKVFSGEI TPAQYNQAWW ELREKYQGVK APTDRTEADF DPGAKYHVPG NVPYTRYFLA HILQFQFHKA LCDTAGDKGP VHRCSIYGNQ AAGEKLNKML ELGASQPWPV ALKEVTGTEG MDAKAVLDYF APLKTWLDEQ NTAANRQCGW
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