| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1920 |
|---|
| Symbol | |
|---|
| ID | 4258659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 2267344 |
|---|
| End bp | 2269527 |
|---|
| Gene Length | 2184 bp |
|---|
| Protein Length | 727 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638122583 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
|---|
| Protein accession | YP_737966 |
|---|
| Protein GI | 114047416 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0874126 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCGAC GTCAGCATCA GCATTTAGTC GAGTCTTTAG TGCATTCCAC AGCTAAACAG
CAGGGGGATT TTACTAAGAC CGCAGAGTTA GCCACTGAGC TACTTTGCCA AAATTTAGCC
ATTTCTCTGG TGTCGGTATG GATTTTTTCC GCCGATCAAT CGAGCCAATC CCTGGTGGCG
CAATTTGGCG CCATGGCCCT ACAAGACACC TACCGACCTT CGCAGTTGCA GACACTGCCA
CGCTATTTAA ATGAACTAAA AAGTCATAGA CACATAGATG CGGGCAACAC GCTTATCGAT
CCGCGCTTGA CTGAGTTAGT CGATAACTAT TTTATCCCTC GGCAAATTTT ATCTAGCCTC
GAGATTGGCA TTCGCATTAA TGGCCATCTC GAAGGCGTGC TTTGCCTCGA GCGAGCGCAA
CTGACTCACC ATTGGCACGA TAGCGAAATT CACCTTGCCT GCCAAATGGC CGATCAACTG
GCCCTCACGC TGGCCACCAA GCATACCTAT GACAAAGAAG AGCGCTTAAG CCTGTTCCGC
TGTGCCACCG AGCAGTCTCG TCAAATGAGT ATGCTGATTA ACCTACACAC CGAAAAAGTG
GAATACGTGA ATCAAGCCCA CGAGGAGATC ACTGGCTTAG CGCGTGAAAA AAGCATAGGC
ACCAATTTAC GCGAGTTAAG TTTCTTTAAG CAGCACAATG AATTAGCTGA ACTAACGCTC
GCGCAAATCT TCAGAGGCGA GCAGGCCAAG GGCGAAGTGC AATTTAATCG AGCCGATGGA
AGTCGATACT GGCTTAAGTA TGTGGTCAGC CAATTTATCA CCGATCGAGG TAATCATTAC
GCCTTAGTCT CCGGCGAAGA AAGCACGGAT GAACACAACT ATAAAGCTGA GCTTGAGCGT
TTAGCTTGGC GTTGTAGTTT GACTGGGCTG AATAACCGCA GCCACTTTAA TCGAGTACTA
GAGAAAACCA ACAAGGGATT ATTGTTACTC GTTGATTTAG TCGCCTTTAA GCGTTTCAAC
GATACCTATG GCCACGAAAA TGGCGATAGC TTGTTGATTG AAATTGGCCG GCGCTTAAAA
CATTTTTCGG AAATTAATAA GGCGACGGAA ATTGCTCGCG TCGGTAGCGA CGAGTTTGCC
GTGTTGCTCA CCGATGATAA CGCAGTTTAC GATCTGGATT ATTTCAGTAC CCGCCTATAT
CAGCATTTAG CCATGCCGAT TTTAATCGGT CGTGAGCAAA TCGAACCTAA ACCCGCACTG
GCGGTTGTCG ATATCGCCTC GGTGGCCAAT CTGTTCGCGC CGCTGACCTG CGCCGATATT
GCGGTGCAAT ACGCGAAGAA GAAAAAGGGT ACAGCTATTC AAGTGTTTAA CAGCACCTTG
CTCAGCGCCT TTAAGGAAGA TGCGCAAATC GAGCGTGATT TACATAGCGC GATTCGCGGC
CGTCAATTCG AACTTTATTA TCAGCCCTTA CGGGATCTGG AGCAGAAAAC CTATATCGGT
GCCGAAGCAC TGATTCGCTG GCATCACCCT AAAAGAGGCG TGCTGTATCC CGGCGCTTTT
ATCGATATTG CCGAACAATC TGGGATGATC AACGCCATTG GTAGCTGGGT ACTGGAGGCC
GCGTGCCGAC AATTAAATAT ATGGCAGCAC CATAATGCCG ATTTAAGCAT GCATGTTAAT
GTGTCGGCGC GGCAGTTTTT TAGTGGAAAC CTGTATGAGC AAGTCTGGCA ACTGCTGACG
CGCTATCGTT TAAAGCCTAA GACCCTGATC CTTGAGATCA CCGAGACGGA ATTAATGGGC
GACATTCGCC ATGCCACGCT CTTATGTCAG GAATTGGCAG AGCTGGGTGT GGGGCTGGCC
ATCGATGATT TTGGTACGGG TTACAGCTCG ATGCGCTATC TTAAACAGTT TCCGATCAGT
AAGTTAAAAA TCGATCGCTC CTTTATCTCC GATCTCACCA TTAGCCGCGA AAGCCAAGAA
ATCGTCTCGG CCATTATTGC GATGGCAAGC GCGCTCAATA TTTCCTTGAC CGCAGAAGGG
GTTGAAACCG CCGAGCAGGA AGCGTTCTTG GCGAAGAGTT TTTGCCATCA GGCGCAGGGG
TATTTATACA GTCCTGCGTT GCGAGAGCCC GAATTTGCGC AATTCTTATT GGCGGCAAAA
GAACCTAATC TTGTGACGCA TTAA
|
|---|
| Protein sequence | MKRRQHQHLV ESLVHSTAKQ QGDFTKTAEL ATELLCQNLA ISLVSVWIFS ADQSSQSLVA
QFGAMALQDT YRPSQLQTLP RYLNELKSHR HIDAGNTLID PRLTELVDNY FIPRQILSSL
EIGIRINGHL EGVLCLERAQ LTHHWHDSEI HLACQMADQL ALTLATKHTY DKEERLSLFR
CATEQSRQMS MLINLHTEKV EYVNQAHEEI TGLAREKSIG TNLRELSFFK QHNELAELTL
AQIFRGEQAK GEVQFNRADG SRYWLKYVVS QFITDRGNHY ALVSGEESTD EHNYKAELER
LAWRCSLTGL NNRSHFNRVL EKTNKGLLLL VDLVAFKRFN DTYGHENGDS LLIEIGRRLK
HFSEINKATE IARVGSDEFA VLLTDDNAVY DLDYFSTRLY QHLAMPILIG REQIEPKPAL
AVVDIASVAN LFAPLTCADI AVQYAKKKKG TAIQVFNSTL LSAFKEDAQI ERDLHSAIRG
RQFELYYQPL RDLEQKTYIG AEALIRWHHP KRGVLYPGAF IDIAEQSGMI NAIGSWVLEA
ACRQLNIWQH HNADLSMHVN VSARQFFSGN LYEQVWQLLT RYRLKPKTLI LEITETELMG
DIRHATLLCQ ELAELGVGLA IDDFGTGYSS MRYLKQFPIS KLKIDRSFIS DLTISRESQE
IVSAIIAMAS ALNISLTAEG VETAEQEAFL AKSFCHQAQG YLYSPALREP EFAQFLLAAK
EPNLVTH
|
|---|
| |