| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1891 |
|---|
| Symbol | |
|---|
| ID | 4258771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2229997 |
|---|
| End bp | 2231589 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638122546 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_737937 |
|---|
| Protein GI | 114047387 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.12053 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCTCTA CCGCAAATAT CACCATGCAA TTCGGCCCTG AGCCATTATT TGAAAATATC
TCGGCAAAAT TTGGCAACGG CAACCGTTAT GGTTTGATTG GCGCAAACGG CTGCGGCAAA
TCGACTTTTA TGAAGATCTT GAGTGGCGCC CTCGCCCCAA CCTCGGGCAA CGTGTCTATC
ACGCCGGGGT TAAAGGTCGG CACCCTAAGC CAAGATCAAT TCGCCTTCGA GCAATACACG
GTTATCGATG CGGTGATCAT GGGCGATACC CAGCTGTGGA AAATCAAGCA AGAGCGTGAT
GCTATTTATG CCAAACCCGA TATGACCGAA GAAGACGGCA TGCGTGTGGG CGATCTCGAG
AGTGAATTTG CCGAGATGGA CGGCTACAGC GCCGAGAGCC GCGCGGGCGA AATTCTGATT
GAAGCAGGTA TAGAAGAGTC CTTCCACTAT GGCCCTATGT CACAGGTCGC CCCCGGTTGG
AAACTGCGCG TGCTATTAGC CCAAGCACTG TTTGCGAACC CCGATATTCT GCTGCTCGAT
GAGCCCACCA ACAACTTGGA TATTCACACC ATCAGTTGGC TCGAAACTGA GCTGAATAAG
CGTAAGTGCA CCATGATCAT TATTTCCCAC GACAGGCACT TCTTAAATGC TGTCTGTACT
CATATGGCGG ATATCGATTA CGGTGAGCTG CGGATTTACC CTGGCAACTA CGAATACTTC
CTCGAGCAAT CAGCCTTGCA GCGCGAACAA TTGCTGTCGA GCAACGCCAA GAAGAGCGCC
GAGATTGAAG AGCTGCAGGA CTTCGTTAAC CGTTTCGGCG CTAACGCCTC TAAAGCAAAA
CTCGCCAGCT CACGCGCCAA GCGCATGGAC AAAATTAAAC TGGATGAAGT CAAATCCTCC
AGCCGTATCG CGCCATCGAT CCGCTTCGCG CCGGGTAAGA AGATGCACCG TCAGGCATTG
GTGCTTGAGA ACCTCGCCCA CGGTTTTGAC GGTGAGTTGC TATTCGAAGG CGGCGATCTA
ATCCTCGAAG CAGGTGCAAA GCTTGCGATT ATCGGTGAGA ACGGTGTCGG TAAAACCACC
TTATTACGCT GTTTAGTCAA TGAGTTAATC CATAATCAAG GCGTGATTAA GTGGTCAGAA
AACGCTTCCA TTGGTTACTG CCCACAGGAC AGCACCAGCG ATTTTGATAA TGATTTGACT
ATTATTGAAT GGATGGACCA ATGGCGTCAG CCAAAACACA ACGACTTGAT GGTACGCGCC
ATGTTAGGTC GTTTGCTGTT TACCGAAGAT GATGCCAACA AAAAAGCCAA AAACTGCTCA
GGTGGTGAGA AAAACCGTTT AATTTTCGGC AAGTTAATGA TGCAAGATAT CAACGTCATC
ATTATGGACG AGCCGACCAA CCATATGGAT ATGGAAGCGA TTGAATCCTT AAATAATGCC
CTCAAAGATT TTGAAGGCAC ATTGATTTTC GTCAGCCACG ACCGCGAATT TGTGTCCTCG
TTAGCGACCC GCATTATCGA TATTCGCGAT AGAAAATTGG TCAACTTCCA AGGGACCTTT
GATGAGTATC TGGCAAACCT GGCCAGTGCA TAA
|
|---|
| Protein sequence | MISTANITMQ FGPEPLFENI SAKFGNGNRY GLIGANGCGK STFMKILSGA LAPTSGNVSI
TPGLKVGTLS QDQFAFEQYT VIDAVIMGDT QLWKIKQERD AIYAKPDMTE EDGMRVGDLE
SEFAEMDGYS AESRAGEILI EAGIEESFHY GPMSQVAPGW KLRVLLAQAL FANPDILLLD
EPTNNLDIHT ISWLETELNK RKCTMIIISH DRHFLNAVCT HMADIDYGEL RIYPGNYEYF
LEQSALQREQ LLSSNAKKSA EIEELQDFVN RFGANASKAK LASSRAKRMD KIKLDEVKSS
SRIAPSIRFA PGKKMHRQAL VLENLAHGFD GELLFEGGDL ILEAGAKLAI IGENGVGKTT
LLRCLVNELI HNQGVIKWSE NASIGYCPQD STSDFDNDLT IIEWMDQWRQ PKHNDLMVRA
MLGRLLFTED DANKKAKNCS GGEKNRLIFG KLMMQDINVI IMDEPTNHMD MEAIESLNNA
LKDFEGTLIF VSHDREFVSS LATRIIDIRD RKLVNFQGTF DEYLANLASA
|
|---|
| |