Gene Shewmr7_1853 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_1853 
Symbol 
ID4256710 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp2179114 
End bp2182818 
Gene Length3705 bp 
Protein Length1234 aa 
Translation table11 
GC content52% 
IMG OID638122510 
Productexodeoxyribonuclease V, gamma subunit 
Protein accessionYP_737901 
Protein GI114047351 
COG category[L] Replication, recombination and repair 
COG ID[COG1330] Exonuclease V gamma subunit 
TIGRFAM ID[TIGR01450] exodeoxyribonuclease V, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAAGT TAATCCAATC CAATCAAATG GAAGTGCTCT GTGCCCATCT TGCCGCGTAT 
TTACGCCAGC CGCTACCCGG CGCGGGGTTA TTGCAAAATG AGCATATTTT GGTGCAAAGC
CCCGGGATGT CGACTTGGTT ACGCCTTGAA ATTGCAAAAC AAAATGGTAT TGCCGCCGCG
CTGGAGTTCC CGCTACCTTC CAGCTTTATT TGGCAACTGT GCCACGATTT ACTCCCCAAT
GTCCCCAAGG AAAACGCCTT CACTAAGGCG GCAATGACCT GGAAGCTGAT GCAACTACTG
CCGCGGCTAC TGGATGAACC TTCCTTTGGG CCACTGCGCC ATTATTTGGG TCATACCTTA
GATAATCTGG AATCGAGCGC GGCTGACACC CATAGCAACC ATCAACATGG TGCCGTAAGC
GCCGATGATA TTAAGCTTTA CCAACTTTGC GGCCGCATCG CCGATATCTT CGACCAATAT
TTGGTTTACC GCCCCGACTG GATTGCCGCG TGGGAAGCCA ATGAACCGCT TGAGTCACTC
AAATTGAATG AGGAGCAAAG CTGGCAACCC ATCCTCTGGC GCGCGCTGAT TGCCTACAAT
CGCGATGAGC TGCGTCAAAG CCACTACCAC AGGGCCAATC TACATCAGGA TTTGATTGCT
GCATTGGGGG ATAGCACCAA TTCCCTCGCA AAATTGCCGC AGCGTTTATT TGTGTTTGGG
ATCTCCTCCA TGGCGCCCCA AACCATCGAT GTGCTCCACC AGCTCGCGAG CCGTATCGAT
GTGATTATCT TAAGCCTTAG CCCCTGTCAG CATTACTGGG GCGACATTAT CGACCCACGC
CATCGGGCGC GTATGGCATT GCAATATGCC GGAAAACGCC AATTAGCCGA GCAATGGGAA
GATAAACTCG AAGTCGGCAA TCCCCTACTC GCCAACAATG GCAAGATGGG CCGCGAATTA
CTCGATATGC TGCTCGAACT GCCCCCAGAG CACTGTGACT TTGGCGACGA TGTGTACTGC
CAGCCCTGCG GCGATCCTAA CGATCCCCAC GCTCGCGCCA GCATGCTAGC CGGGGTGCAA
TACGATATTT TAGAAATGCA GACACTCGAT CGGGTACTCG GGCCAGATGC TGAGCTATAT
CAAGAGGTCG CGAATCGCCG AGTATTAACA GCCGACGATG ATTCGATTCT AATCAAGAGT
TGCCACAGCC CACTTAGGGA AGTCGAAACC CTGCACGATC ATTTACTCGA CCTGCTGGAT
AGCGACAACC AACTCACGCC CAAAGACATA GTGGTCATGA TGCCGGATGT CGCCGCCTAC
GCCCCCTATA TCGATGCGGT GTTTGCAGCC AAACAGGGAC TGGAATATAT CCCCTACGCC
ATTGCCGACC GCGGCGCGGC GCAGGAATCG CCACTCATAA ATAGCTTTTT GAATTTACTC
AATATTAATC AGAGCCGTTT CGGACTGACG GATATTTTAA GCATTCTCGA AGTCCCAGCC
ATTTTGCGAC GTTTTCAGCT CGAAGAAGAC GAGCTGCCAC TCATTCGCCG CTGGTTAGAT
GAAGCCGGTG TGCGTTGGGG CCGCGATGAA CAGAGCCGCC TTAAACAGGG CGTGCCTGCC
TTCGAGCAAA ACTCCTGGGC CTTTGGCATA AAACGCTTAA TCTTAGGCTA TGCCTTAAGG
GACGATGCGC CGCTATATCA ATCATCTCCG CAGGGAATGC ACTATTTAAC GGTTGCAGGG
GTGGAGGGGC AATCGGCACA GGCCCTTGGC AAACTGTTGA ATTTTATTGA AGTCCTCGAT
GAGACCACCC AAGTATTAGC CAAGGCGCAA GCGCCCTCAC TGCGGTTACT CGAACTCACC
GAGCTGTTAA ATGCCTTTTA CGCCCCCGAT GAGGACGAAC GAGAGCAGCT GCAAGAAATT
CGCGATGCGA TTGCCGCCTT AGAGCAAGAG CTGCTTGCCG CGAGCCCAGC CGATATGGGC
CCACAAGCCA ACGACTTAGA TTTAAGCATC GAAGTACTGG CGCTTTGGTT TAATCAACGC
TTAACCGAGT CACGTGTCGG CCAACGATAC CTCGCGGGCA GCGTAAATTT TTGTACCTTA
ATGCCGATGC GCTCGATTCC CTTCAAGGTC GTTTGCCTGC TGGGGATGAA TGATGGTGTC
TATCCTAGGG TGCAACATCC AGTGGGCTTT GACCTGATGG CCCATTTTGG TGCGCGCAAA
GGCGATCGTT CCCGCAGATT AGATGATAGA TACCTGTTTT TAGAGGCGTT ACTCTCGGCG
CGGGAGCTGC TTTACATCAG TTATATTGGC CGTAGCGAAC GGGATAACTC GGAGCGTATT
CCATCTATGC TTGTCTCCGA GCTAATAGAA TATTGCCAGT TATGTTATCT GCCTGAATCC
CTTGCGGCAG AAGCTTCTAC TGTCAGTAAC GAAGTCGCCC AACAGGCATT ACTTGAGGCT
ATTGTGAGCC ATCAGCCGCT GCAACCTTTT GATCCTAAAC TGTATCAAGC AGCACTGCCG
CAAGCCCCCA CCTTCCACGG GATAAAACAG AGTTATAGCC AGCAGTGGTG TCCGCCCGAT
AGTCACAGTC AGTTGCATCA TGGCCGATTT ATTGAAGCCC ATACCCAGAT AGTGCTCGAA
GATGACGCAA TTGGTGATAG TGTTCAGGAT ATTGAGCCCC TTGGCGAAGC TGAGCATGTC
GATATCTCGG CCTTTATTCG CTTCTTTCGC AATCCCGCGC AGTATTTCTT TAATCGTACC
CTGAAAGTCG ATTTAAACCT GAATATTCAA GCGGATGACA ACGATGAGCC CTTTAGTCTT
AATGCGTTAG AGCGTTATTT ATTACAGGCT CAACTCCTTG GCGATGCGCT TGAGCAAGGG
CAAAACGAAC CCAGCGCTGA ACTGTTACAA CGCCTTAAGG CCAGCGGTAA TTTGCCGATG
CAGCCCTTTG ATGATCTGCT GCTGCGCCAA TACAGCCATG ATATTGCGCC GCTGATTGGC
AGAACCCTGT TTATGCGCGG CGATGTCGCT CCCCGCCATG CCGATATTCG GCTCAGCTTT
GAGTTACCCC ACCAGAACGC TGGGTCTCAG TTAAAAGCCA AGCGGGTGAT CCTCGAAGGT
CGAATCGATG ATATCAGCCC TAAGGGATTG GTCACTTGCC GCCCCGGCAG TGCCCATGGG
CGGGACATTT TAGCCTTGTA TTTGCGTCAT TTATGTTTGA TGGCCGCAGG AGTGGCTCAA
CCTAGCTACC TGCAACCTAG CTATCTGCTG GATATGGGGC ATTTTCATGC CCTCGCGCCC
ATTACGCCAG CGCTTGCCCA TGCGCAGCTC GCCAACTTAT TACAGCTTTT TTATCAGGGC
CAAATTCATC CCCTGTGTTT TATGCCAAGA ACCTCCCTCG CCTATGCCAG CGCTGAGGCG
GATGAAGAGG AAGACCCACA CACAAGCAAA GACCCGCACA AAGCCCGGCT CGAAGCGGCC
CAAAGCGAAT GGCTGGACGA GCAAGGTGAA CTTGGTGAAG GCACAGATCC CCATTATCAG
CGGCTGTTTC ATTTTCCCGA CGACTTTACC GAGGCACATT TTGGCAAACT CGCCGATGAC
ATCTATCGGC CAATGCTTAG CCTGTATCAC AAGGATACCC TCGCCCAACT CGAGGAATTT
GCCCTGAATG AAGCCCCAAC CGCCACAACA GAGGGAGCGC ACTGA
 
Protein sequence
MLKLIQSNQM EVLCAHLAAY LRQPLPGAGL LQNEHILVQS PGMSTWLRLE IAKQNGIAAA 
LEFPLPSSFI WQLCHDLLPN VPKENAFTKA AMTWKLMQLL PRLLDEPSFG PLRHYLGHTL
DNLESSAADT HSNHQHGAVS ADDIKLYQLC GRIADIFDQY LVYRPDWIAA WEANEPLESL
KLNEEQSWQP ILWRALIAYN RDELRQSHYH RANLHQDLIA ALGDSTNSLA KLPQRLFVFG
ISSMAPQTID VLHQLASRID VIILSLSPCQ HYWGDIIDPR HRARMALQYA GKRQLAEQWE
DKLEVGNPLL ANNGKMGREL LDMLLELPPE HCDFGDDVYC QPCGDPNDPH ARASMLAGVQ
YDILEMQTLD RVLGPDAELY QEVANRRVLT ADDDSILIKS CHSPLREVET LHDHLLDLLD
SDNQLTPKDI VVMMPDVAAY APYIDAVFAA KQGLEYIPYA IADRGAAQES PLINSFLNLL
NINQSRFGLT DILSILEVPA ILRRFQLEED ELPLIRRWLD EAGVRWGRDE QSRLKQGVPA
FEQNSWAFGI KRLILGYALR DDAPLYQSSP QGMHYLTVAG VEGQSAQALG KLLNFIEVLD
ETTQVLAKAQ APSLRLLELT ELLNAFYAPD EDEREQLQEI RDAIAALEQE LLAASPADMG
PQANDLDLSI EVLALWFNQR LTESRVGQRY LAGSVNFCTL MPMRSIPFKV VCLLGMNDGV
YPRVQHPVGF DLMAHFGARK GDRSRRLDDR YLFLEALLSA RELLYISYIG RSERDNSERI
PSMLVSELIE YCQLCYLPES LAAEASTVSN EVAQQALLEA IVSHQPLQPF DPKLYQAALP
QAPTFHGIKQ SYSQQWCPPD SHSQLHHGRF IEAHTQIVLE DDAIGDSVQD IEPLGEAEHV
DISAFIRFFR NPAQYFFNRT LKVDLNLNIQ ADDNDEPFSL NALERYLLQA QLLGDALEQG
QNEPSAELLQ RLKASGNLPM QPFDDLLLRQ YSHDIAPLIG RTLFMRGDVA PRHADIRLSF
ELPHQNAGSQ LKAKRVILEG RIDDISPKGL VTCRPGSAHG RDILALYLRH LCLMAAGVAQ
PSYLQPSYLL DMGHFHALAP ITPALAHAQL ANLLQLFYQG QIHPLCFMPR TSLAYASAEA
DEEEDPHTSK DPHKARLEAA QSEWLDEQGE LGEGTDPHYQ RLFHFPDDFT EAHFGKLADD
IYRPMLSLYH KDTLAQLEEF ALNEAPTATT EGAH