Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1852 |
Symbol | |
ID | 4256709 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 2175305 |
End bp | 2179114 |
Gene Length | 3810 bp |
Protein Length | 1269 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638122509 |
Product | exodeoxyribonuclease V, beta subunit |
Protein accession | YP_737900 |
Protein GI | 114047350 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACTAAGG TATCACCCGC TTTGCCGTTA GATCCGCTCA CCCTGCCATT TGGCGGCAGT CGCTTAATCG AGGCCAGTGC GGGCACGGGT AAAACCTATA CCATTTCAGG CCTGTATCTC AGATTACTGC TTGGGGATGG CTTAAGCGAA CCGCTTAATT GTGAACAAAT TCTGGTCGTG ACCTTTACCA ATGCCGCCAC CGAGGAGCTG CGGGACAGAA TTCGCCGCCG CATTCAGGTG GCCTTTAAGT GTTTCTTAGG GCTTGAGATT AACGATCCTT TTGTGCAGGC GCTGTACGAT AAGACCCCTG AAGCCGAGCG CGCTATCGCC CTAAGACGCT TCGATTTGGC GCTCAAATCC CTCGACGAAG CGGCGATTTT TACCATTCAC GGATTTTGCC AACGGATCTT GGCCGATCTC GCCTTCGAGT CATCATTGTT GTTCGAGTCG GATTTTACCT TGGACGACAG TGAGTTTTTG CACCATGCGG TGCGGGATTT TTGGCGTGAG GCCTGTTATC CGCTGCCGGA GTATTTAGCC CAAATTATTG CCAGCGAATT TGGCGATCCC GACGGATTAG TCAAGCAGCT GAGAGCATTG CTCGGTGCCA GTGAGGCCAA ACCGCTTCAA CCCGTGCAGC CCTTTGCTCG TTTGGCAGAG TCCTTAAGCC AGAGTGTGCA GCGCTTTAAA CTCGCTTGGC CGCGTGGCCG CGACGCGCTG TTAGAGTTAC TTCATAGCCT GCCGCTTAAC GGTCAACGTT TTGGTAAGGC AAGCGACAAT TACCCCAAAT TGGCGGAAAT GTTCGACCAA CTGGACAACT TCTTAGCCTT TGGCCACGGC TTGCCGCCGC TTAAAGTGCT CGAAGCGCTG TCGTTATCCG AGCTTAAGCT GAATAAAGGC GGCGTGCTCC CAAGTGCGAG CGAGGCGCCA CTGCTTGATC ATATGGAGCA GTTAGCCGCG TTGATTAACG CGATAAAACC CGCATTTCTC TACAGCGCCA AACAAGGGAT CAGCGAGCGC TTTGCCAAGC AAAAACAGCA GAAAAATGTA CTGACACCCG ATGATCTGCT CACTACTTTG GCCGCAGCAA TGCAGGCCAA TCCCGACACT TTGCCTAAGG CAGTGGCGAG CCGCTTCCCC GTGGCGCTTA TCGATGAGTT CCAAGATACG GATCCACTGC AATTTGCTAT TTTCTCAGGG ATCTATCAAA CCCGTTTGGG GATTGATACT CAAGATCCGG CTGCTGAACC TAAGCCTCGC ACGGATAGCA AATTAAGCCT GCTGATGATT GGCGACCCTA AACAGGCGAT TTATGCTTTC CGCGGCGCCG ATATTTACAC CTATATCGAG GCGCGCAGAC AAACCCAGGC GCACTATTTC CTCGACACTA ACTATCGCTC GAGTCGCAAT CTGGTTATGG GGGTGAATCA TTTATTTGCC CAGCATTCGG ATCCTTTTAT CAGCCAATCA ATTCCCTTCG ATCCAGTCAA AACACCTGCC AGTGCGGCAG CCAAACAACT CGTTGAGCAT GCGCCCAATA GCGCCGCGCT ACGGTTAAAA CTCTTGAGTG AAGGCGAAAC TGGACTTAAT AAGGCCAGTG CGCGGCAAAC CTTGGCCGAA GACACCGCCG CCGAAATCAC CCGTTTACTG ACGCAGGCCG TCAATGGTCA ATGCAGCACG CCCAAAGGGC CATTAATTGC CAAAGATATC GCCATCTTAG TACGCGATAG AAACGAAGCG GCCGTGATGA AAACCGCGCT GAGCAAGCGC CAGATTGGTG CCGTCTTTTT AAGTCGCGAC AGCGTATTTG AAACCGTCGA AGCGCGGGAA ATGGCGCTCA TTCTGCGCGC CTTGGCCAGC CCCAAGGACG AGCGCGCCCT GCGTAGCGCC CTTGCGACCG CCCTGCTTGG TTATCGCGCC GAACAAATTC ATGCCTTTAA CCAAGATGAA GAGCAGCGCC AAAGGCTGCT AGAGCAGTTT TTTGAGCTGC ACCAGATCTG GCAAAAACGC GGCATTATGC CGGCGCTGCT CAGCCTAGCC AATGCCACCC AGATGGTTGC GCGGCGGCTG CATTCTCCCG CTTCGACAAG CACTGACCAA GCGGAGCAAG ATGCGGAAGT TCATCTTGAG GCGAACAATG GCGAACGTCG ACTCACGGAT TTTCGCCACT TAGCCGAGCT GTTGCAGCAA AAGGCGACCG AAATTGATGG GATGAGTGCC CTGCTCAACT GGTATGAGCA ACAACTGATT GATAATACAG GGACAGATGA GCAGCAGCTA CGCCTTGAAA GCGAGCAAAA CTTAGTGCAA ATCGTCACTA TCCATAAGAG TAAGGGGCTG GAATACCCAG TGTGCTTCGT GCCCTTTGTC AGCCTCGCGC GGGATAATCG CCGCCGCCTG ACACCTATGC TCTACCACAG AACCAATGCC GATGGCGCGC AGGAACTGGT GTGGGATTTA GAAGGCACGG ATGAAGGTTG GGAACAGGCA AAGCAGGAAA CCTTAGCCGA AGATCTGCGT CTGCTCTACG TGGCGCTCAC CCGCCCCGTG TACCTGTGTT ATTTGTACAT CGCCAACCAT AGCCGCATGT TAAAGGCAGG GCTTAAAAGC CAGCTGCATG AAACCGCCAT CGGTTATTTG CTTGGGATCA CTGACACTGA TTGTGATTTT TCGCGTCTGC AACATGCCGC CAAGGCGCTG GTCGCGGGTC TCGAGTCGAG TCAGCCTGCG ATCAGCATTG AGGTGGTGGC CGATGACATT GAGGCTAACA AGCTGCATAC GGGGGGAAGT GATTCTCATA CCTTGAGTGC CCGTAAGGTC AGCCGTCAGT ATCGCACCCC ATGGCGCGTC GGCAGTTATT CCGGTTTAGT TAAAAATGCG CCCCACGCTA AAGCCACACC CGGCGCCGAT GATGAAGTCA ACGCCGTATT GGGTACAGAT ACCGCAAACA GCGCAGCTGA TCCCTTGTGG CAAGAGGCTT TGTTGCAAGA GGCTGCCGAT ACACAAGCGC AACCTCTGCT TAATCGCTTT AGTTTTGAGC GCGGCGCCAA CGCGGGTAGC TTTATGCACT TAGTGCTTGA GTTAATTGAT TTTACCCAAG CTCCAATCGA CCTACCCCGA GAGCTACCTA AGGCCATGTT GCAATATGGC ATTGCCCCCG AGTGGCAACC CGTATTAGAA GATTGGTACC TTGAGGTATT GCAAGCTCCG CTGGCGTTAA TGGCGCAGGA TAATCAACTT ATCAATCCCG AACTCTGTTT AGCCGCACTC GCGCCGCAGC ACACCTTAGT CGAGATGGAG TTTTACCTGC CTCTGAATCG CTTAAAGGAT ACTGAGCTTA ACCAACTCCT TAGGCAATTT GGCTACGATA CCGAGCTGCA GTTTGACGAG TTACAGGGCA TGCTTAAGGG CTTTATCGAC TTAACCTTTG AATATCAAGG AAAGTTTTAT ATAGCAGACT ATAAGTCGAA CCATCTGGGG GATAATATTC AGGCCTATCA TCATAGCGCG CTAAAACAGG CGATTAGCGA CCATAGGTAT GATTTGCAAT ATATTCTCTA CTCCCTTGCG CTGCACCGCT ATTTAGCGAT GCGCTTGCCC AATTATGATT ACGATACCCA TATTGGCGGC TGTTATTATT TGTTTTTACG GGGAATGTCG GTGCAATATC CAGGCTTTGG TATTTATTAC GATAAACCGC CCAAGGCGCT AATTTTGGCC TTAGATGCGC TGTTTCAGCG CAGTCTAGAG GCAACAACTG ACTCAAATAA AAAGTCCGAT GCTCAACTGG ATACGGGAGC AATGGCATGA
|
Protein sequence | MTKVSPALPL DPLTLPFGGS RLIEASAGTG KTYTISGLYL RLLLGDGLSE PLNCEQILVV TFTNAATEEL RDRIRRRIQV AFKCFLGLEI NDPFVQALYD KTPEAERAIA LRRFDLALKS LDEAAIFTIH GFCQRILADL AFESSLLFES DFTLDDSEFL HHAVRDFWRE ACYPLPEYLA QIIASEFGDP DGLVKQLRAL LGASEAKPLQ PVQPFARLAE SLSQSVQRFK LAWPRGRDAL LELLHSLPLN GQRFGKASDN YPKLAEMFDQ LDNFLAFGHG LPPLKVLEAL SLSELKLNKG GVLPSASEAP LLDHMEQLAA LINAIKPAFL YSAKQGISER FAKQKQQKNV LTPDDLLTTL AAAMQANPDT LPKAVASRFP VALIDEFQDT DPLQFAIFSG IYQTRLGIDT QDPAAEPKPR TDSKLSLLMI GDPKQAIYAF RGADIYTYIE ARRQTQAHYF LDTNYRSSRN LVMGVNHLFA QHSDPFISQS IPFDPVKTPA SAAAKQLVEH APNSAALRLK LLSEGETGLN KASARQTLAE DTAAEITRLL TQAVNGQCST PKGPLIAKDI AILVRDRNEA AVMKTALSKR QIGAVFLSRD SVFETVEARE MALILRALAS PKDERALRSA LATALLGYRA EQIHAFNQDE EQRQRLLEQF FELHQIWQKR GIMPALLSLA NATQMVARRL HSPASTSTDQ AEQDAEVHLE ANNGERRLTD FRHLAELLQQ KATEIDGMSA LLNWYEQQLI DNTGTDEQQL RLESEQNLVQ IVTIHKSKGL EYPVCFVPFV SLARDNRRRL TPMLYHRTNA DGAQELVWDL EGTDEGWEQA KQETLAEDLR LLYVALTRPV YLCYLYIANH SRMLKAGLKS QLHETAIGYL LGITDTDCDF SRLQHAAKAL VAGLESSQPA ISIEVVADDI EANKLHTGGS DSHTLSARKV SRQYRTPWRV GSYSGLVKNA PHAKATPGAD DEVNAVLGTD TANSAADPLW QEALLQEAAD TQAQPLLNRF SFERGANAGS FMHLVLELID FTQAPIDLPR ELPKAMLQYG IAPEWQPVLE DWYLEVLQAP LALMAQDNQL INPELCLAAL APQHTLVEME FYLPLNRLKD TELNQLLRQF GYDTELQFDE LQGMLKGFID LTFEYQGKFY IADYKSNHLG DNIQAYHHSA LKQAISDHRY DLQYILYSLA LHRYLAMRLP NYDYDTHIGG CYYLFLRGMS VQYPGFGIYY DKPPKALILA LDALFQRSLE ATTDSNKKSD AQLDTGAMA
|
| |