Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1812 |
Symbol | |
ID | 4258397 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 2135317 |
End bp | 2136549 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638122470 |
Product | LolC/E family lipoprotein releasing system, transmembrane protein |
Protein accession | YP_737861 |
Protein GI | 114047311 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0248293 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCTTC GATTTCCTCT CTACGTTGGT TACCGTTATT GGCGGGCCAG AAAAGCAAAC GCCTTTGCTT CTTTTATTAC CTTATTTGCC GTTTCAGGCA TTTTTTTAGG GGTGGCGGCC TTAATCGTGG TCAGCTCGGT GATGAATGGC CTCGAAGGAC AATTAAAACA GCGCATTTTA GGCGCCGTAC CGCAATTGAC CGTGGTGACT GAGACGCCGT TAAGCGATTG GACTATACCT GCGGACAAAC TCAAAGCATT GCCTGGCGTG CAGGGCGTGA CACCGAGTGT GTCGACTCAA GCCATGGTGC AGTCGGCGGC GAATATCCGC GCCGTGCAAG TGTTTGGGGT GTTTCCAGAG CTTGCCGAAA AACTCTCTAT GGTGGCGCAG CATACCTATT CGGGCGCGTT TAACGAGCTA ACCAGTGGCC AATATAAGGT CATTTTAGGC AGCGAGCTTG CACGCCAATT AAAGGTGAGC CCGGGTGATA CCGTGCGCCT GTTAAGTGGC GATGGCGTAG TGTACTCGCC GCTCGGCCCA GTCCCGAGCC AACGTAAGTT TTTAGTGTCC GCCGTGTTTG AGATGGGCTC ACAGGTAGAT GCGGGCGTTG CCTATATTCA TTATCAAGAT GCCAAACGTT TAATGCGTCA ACCGAGCGAT GAAATCAATC AATTAAGACT GTATTTGAGC GATCCTTTTA TGGCGCCAGC ACTGGCTAAG GATGTAAAGC AGGTTCTTAC ACAGCAGGGC ATCGAGGCGA CGACCAGTGA TTGGCGCGAC ACCTATGGTC ATCTGTTTAG TGCCGTGAAG ATGGAAAAAA ACATGATGTC GCTGATGTTG AGCCTGATTG TGGCCGTAGC GGCGTTTAAT ATAGTGTCAG CACTGGTGAT GATGGTGGTG GATAAAACCA CCGACGTGGC GGTACTCAAA ACCCAAGGCT TACGTACCTC GGCGGTGATG GGCATTTTTG TGGTGCAAGG TTTATTGAAT GCGGTATTAG GTTTAGTACT GGGGCTGGTG GTCGGTATTC TGCTCACCCT TAATTTGAAT GGCATTATGG CGACCCTCGG GATTTCCATT TTAGGCACTG GACAAGTGCT GCCAGTTAAA TTGGAGCTGG GCCAATTGTC GATGATTATT GTTGGCACCT TAGTCGTGAC CTTAGTGGCG ACCCTTTACC CCGCATTGCG GGCGGCGCGG GTGCAACCTG CCACGGCGCT GCGTTACGAA TAG
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Protein sequence | MDLRFPLYVG YRYWRARKAN AFASFITLFA VSGIFLGVAA LIVVSSVMNG LEGQLKQRIL GAVPQLTVVT ETPLSDWTIP ADKLKALPGV QGVTPSVSTQ AMVQSAANIR AVQVFGVFPE LAEKLSMVAQ HTYSGAFNEL TSGQYKVILG SELARQLKVS PGDTVRLLSG DGVVYSPLGP VPSQRKFLVS AVFEMGSQVD AGVAYIHYQD AKRLMRQPSD EINQLRLYLS DPFMAPALAK DVKQVLTQQG IEATTSDWRD TYGHLFSAVK MEKNMMSLML SLIVAVAAFN IVSALVMMVV DKTTDVAVLK TQGLRTSAVM GIFVVQGLLN AVLGLVLGLV VGILLTLNLN GIMATLGISI LGTGQVLPVK LELGQLSMII VGTLVVTLVA TLYPALRAAR VQPATALRYE
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